Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G453200.1 | Wheat | nucleus | 100.0 | 100.0 |
| TraesCS5B01G450300.1 | Wheat | nucleus | 100.0 | 99.13 |
| HORVU5Hr1G106800.2 | Barley | nucleus, plastid | 93.39 | 78.52 |
| TraesCS2A01G227100.2 | Wheat | nucleus | 73.57 | 74.55 |
| Os03t0799600-01 | Rice | nucleus | 70.93 | 73.85 |
| GSMUA_Achr9P25510_001 | Banana | nucleus | 61.67 | 65.12 |
| KRH60792 | Soybean | nucleus | 61.23 | 64.35 |
| VIT_03s0038g00160.t01 | Wine grape | nucleus | 60.79 | 64.19 |
| KRH51480 | Soybean | nucleus | 60.79 | 63.89 |
| Solyc01g110020.2.1 | Tomato | nucleus | 58.59 | 61.57 |
| PGSC0003DMT400079501 | Potato | nucleus | 56.83 | 61.14 |
| KRG99457 | Soybean | cytosol | 25.11 | 59.38 |
| CDY12119 | Canola | nucleus | 55.95 | 55.46 |
| AT4G39100.1 | Thale cress | nucleus | 53.74 | 53.51 |
| TraesCS5A01G201700.1 | Wheat | nucleus, plastid | 55.07 | 43.86 |
| CDX90311 | Canola | nucleus | 55.95 | 37.8 |
| Bra010705.1-P | Field mustard | nucleus | 55.95 | 37.8 |
Protein Annotations
| MapMan:12.3.5.2.1 | Gene3D:2.30.30.490 | Gene3D:2.60.120.650 | InterPro:BAH_dom | GO:GO:0003674 | GO:GO:0003682 |
| GO:GO:0005488 | InterPro:IPR001025 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF01426 | ScanProsite:PS01359 |
| PFscan:PS50016 | PFscan:PS51038 | PANTHER:PTHR12505 | PANTHER:PTHR12505:SF39 | SMART:SM00249 | SMART:SM00439 |
| SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS5A01G445200 | EnsemblPlants:TraesCS5A01G445200.2 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD |
| InterPro:Znf_PHD-finger | TIGR:cd04714 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5A:-:624793400..624796814
Molecular Weight (calculated)
25738.3 Da
IEP (calculated)
7.617
GRAVY (calculated)
-0.818
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKTPGKTPR TPRRILESYT IKGSDGVIRP GDSVLMKAPD TSKPPYVAKI EEIEAAGPRG ANVKVKVRWY YRPEESIGGR RPFHGEKEVF LSDHQDVQSA
101: DTIECKCNVY SFRDYTKLSA VNPEDYFCRF EYKSITGSFV PDRIAVFCKC EMPYNPDDLM IQCEECSDWF HPACIGKTIK EAKKLENFTC EGCVAENGNG
201: NGVKNENSHE STGESDEKQV QSKRRRR
101: DTIECKCNVY SFRDYTKLSA VNPEDYFCRF EYKSITGSFV PDRIAVFCKC EMPYNPDDLM IQCEECSDWF HPACIGKTIK EAKKLENFTC EGCVAENGNG
201: NGVKNENSHE STGESDEKQV QSKRRRR
001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVRLS LFSHLLYRCS ITYL
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVRLS LFSHLLYRCS ITYL
Arabidopsis Description
EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.