Factsheet for AT4G39100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12119	Canola	nucleus	82.89	82.53
KRH60792	Soybean	nucleus	64.47	68.06
KRH51480	Soybean	nucleus	64.04	67.59
VIT_03s0038g00160.t01	Wine grape	nucleus	63.16	66.98
KRG99457	Soybean	cytosol	28.07	66.67
Solyc01g110020.2.1	Tomato	nucleus	61.84	65.28
PGSC0003DMT400079501	Potato	nucleus	60.09	64.93
Zm00001d019039_P002	Maize	extracellular	57.46	59.82
Os07t0186400-01	Rice	nucleus	57.02	59.63
GSMUA_Achr9P25510_001	Banana	nucleus	56.14	59.53
HORVU2Hr1G054100.1	Barley	nucleus	56.14	58.72
TraesCS2D01G242500.1	Wheat	nucleus	56.14	58.72
TraesCS2B01G257000.1	Wheat	nucleus	56.14	58.72
TraesCS2A01G227100.2	Wheat	nucleus	55.7	56.7
CDX90311	Canola	nucleus	82.89	56.25
Bra010705.1-P	Field mustard	nucleus	82.89	56.25
AT4G22140.3	Thale cress	cytosol	57.02	55.56
Os03t0799600-01	Rice	nucleus	51.75	54.13
TraesCS5A01G445200.2	Wheat	nucleus	53.51	53.74
TraesCS5D01G453200.1	Wheat	nucleus	53.51	53.74
TraesCS5B01G450300.1	Wheat	nucleus	53.51	53.28
AT4G04260.2	Thale cress	cytosol	47.37	52.43
OQU88587	Sorghum	nucleus	56.14	48.48
HORVU5Hr1G106800.2	Barley	nucleus, plastid	54.39	45.93

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:2.60.120.650	EntrezGene:830065	UniProt:A0A178UWF3	ProteinID:AEE87017.1
EMBL:AF277453	ArrayExpress:AT4G39100	EnsemblPlantsGene:AT4G39100	RefSeq:AT4G39100	TAIR:AT4G39100	RefSeq:AT4G39100-TAIR-G
EnsemblPlants:AT4G39100.1	TAIR:AT4G39100.1	EMBL:AY050934	EMBL:AY079396	EMBL:AY088603	InterPro:BAH_dom
ProteinID:CAB38830.1	ProteinID:CAB80573.1	GO:GO:0000003	GO:GO:0000785	GO:GO:0000976	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005677
GO:GO:0006139	GO:GO:0006325	GO:GO:0006342	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0019538	GO:GO:0031507
GO:GO:0035064	GO:GO:0035067	GO:GO:0040029	GO:GO:0046872	GO:GO:2000028	InterPro:IPR001025
InterPro:IPR019787	RefSeq:NP_568053.1	ProteinID:OAO97202.1	PFAM:PF00628	PFAM:PF01426	PO:PO:0000013
PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	ScanProsite:PS01359
PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	UniProt:Q9FEN9	Symbol:SHL1
SMART:SM00249	SMART:SM00439	SUPFAM:SSF57903	UniParc:UPI00000A1D03	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD
InterPro:Znf_PHD	InterPro:Znf_PHD-finger	:	:	:	:

Description

SHLSHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWF3]

Coordinates

chr4:-:18217629..18220324

Molecular Weight (calculated)

26123.5 Da

IEP (calculated)

8.319

GRAVY (calculated)

-0.971

Length

228 amino acids

Sequence
(BLAST)

001: MPKQKAPRKQ LKSYKLKHIN KSIQEGDAVL MRSSEPGKPS YVARVEAIET DARGSHAKVR VRWYYRPEES IGGRRQFHGA KEVFLSDHFD FQSADTIEGK
101: CKVHSFSSYT KLDSVGNDDF FCRFEYNSTT GAFDPDRVTV FCKCEMPYNP DDLMVQCEEC SEWFHPSCIG TTIEEAKKPD NFYCEECSPQ QQNLHNSNST
201: SNNRDAKVNG KRSLEVTKSK NKHTKRPG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.