CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019039_P002	Maize	extracellular	75.0	90.41
Os07t0186400-01	Rice	nucleus	71.21	86.24
HORVU2Hr1G054100.1	Barley	nucleus	70.08	84.86
TraesCS2D01G242500.1	Wheat	nucleus	69.7	84.4
TraesCS2B01G257000.1	Wheat	nucleus	69.32	83.94
TraesCS2A01G227100.2	Wheat	nucleus	67.05	79.02
GSMUA_Achr9P25510_001	Banana	nucleus	54.92	67.44
VIT_03s0038g00160.t01	Wine grape	nucleus	54.55	66.98
Solyc01g110020.2.1	Tomato	nucleus	53.79	65.74
PGSC0003DMT400079501	Potato	nucleus	52.27	65.4
KRH60792	Soybean	nucleus	53.03	64.81
KRH51480	Soybean	nucleus	52.65	64.35
KRG99457	Soybean	cytosol	22.35	61.46
EER96695	Sorghum	nucleus	50.0	61.11
CDY12119	Canola	nucleus	50.76	58.52
AT4G39100.1	Thale cress	nucleus	48.48	56.14
KXG25172	Sorghum	mitochondrion, plastid	50.38	48.36
CDX90311	Canola	nucleus	50.76	39.88
Bra010705.1-P	Field mustard	nucleus	50.76	39.88

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:2.60.120.650	EntrezGene:8075023	UniProt:A0A1W0W2I5	InterPro:BAH_dom
GO:GO:0000003	GO:GO:0000976	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006325	GO:GO:0006355	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	GO:GO:0035064	GO:GO:0035067	GO:GO:0046872	GO:GO:2000028	InterPro:IPR001025
InterPro:IPR019787	EnsemblPlants:OQU88587	ProteinID:OQU88587	ProteinID:OQU88587.1	PFAM:PF00628	PFAM:PF01426
ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249
SMART:SM00439	EnsemblPlantsGene:SORBI_3002G058300	SUPFAM:SSF57903	unigene:Sbi.20471	UniParc:UPI0009DC9184	InterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:5641237..5648607

Molecular Weight (calculated)

29733.0 Da

IEP (calculated)

8.481

GRAVY (calculated)

-0.686

Length

264 amino acids

Sequence
(BLAST)

001: MSDTSDRDWR APPQRKVSRK SRLLSDIGHG SSKHGIEPVR RSKRMRSAST GGISSEPAPK VAYPCGISIA AGDCVLMRAS DASKPPYVAR VEAIEAAGSR
101: GTNVRVRVRW YYRPEESIGG RRPFHGSKEV FLSDHYDVQS ADTIEGKCNV HSFRSYTKLD SVNAEDFFCR FEYKSATGSF VPDRIAVFCK CEMPYNPDDL
201: MIQCEECSDW FHPACIGMTI KEAKKLEHFF CQTCTAENGK MVENSHEATA QSEEKPVESK RRRR

Best Arabidopsis Sequence Match ( AT4G39100.1 )
(BLAST)

001: MPKQKAPRKQ LKSYKLKHIN KSIQEGDAVL MRSSEPGKPS YVARVEAIET DARGSHAKVR VRWYYRPEES IGGRRQFHGA KEVFLSDHFD FQSADTIEGK
101: CKVHSFSSYT KLDSVGNDDF FCRFEYNSTT GAFDPDRVTV FCKCEMPYNP DDLMVQCEEC SEWFHPSCIG TTIEEAKKPD NFYCEECSPQ QQNLHNSNST
201: SNNRDAKVNG KRSLEVTKSK NKHTKRPG

Arabidopsis Description

SHLSHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.