Factsheet for VIT_03s0038g00160.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g110020.2.1	Tomato	nucleus	87.44	87.04
KRH60792	Soybean	nucleus	87.44	87.04
PGSC0003DMT400079501	Potato	nucleus	84.19	85.78
KRH51480	Soybean	nucleus	86.05	85.65
GSMUA_Achr9P25510_001	Banana	nucleus	73.02	73.02
KRG99457	Soybean	cytosol	31.63	70.83
VIT_12s0059g01180.t01	Wine grape	nucleus	70.7	70.7
VIT_10s0116g00160.t01	Wine grape	nucleus	69.77	69.77
Zm00001d019039_P002	Maize	extracellular	68.84	67.58
HORVU2Hr1G054100.1	Barley	nucleus	68.37	67.43
Os07t0186400-01	Rice	nucleus	67.91	66.97
TraesCS2B01G257000.1	Wheat	nucleus	67.44	66.51
TraesCS2D01G242500.1	Wheat	nucleus	67.44	66.51
AT4G39100.1	Thale cress	nucleus	66.98	63.16
TraesCS2A01G227100.2	Wheat	nucleus	65.58	62.95
Os03t0799600-01	Rice	nucleus	63.26	62.39
CDY12119	Canola	nucleus	65.58	61.57
TraesCS5A01G445200.2	Wheat	nucleus	64.19	60.79
TraesCS5D01G453200.1	Wheat	nucleus	64.19	60.79
TraesCS5B01G450300.1	Wheat	nucleus	64.19	60.26
OQU88587	Sorghum	nucleus	66.98	54.55
HORVU5Hr1G106800.2	Barley	nucleus, plastid	63.72	50.74
CDX90311	Canola	nucleus	66.05	42.26
Bra010705.1-P	Field mustard	nucleus	66.05	42.26

Protein Annotations

EntrezGene:100252013	wikigene:100252013	MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	InterPro:BAH_dom
ProteinID:CBI38025	ProteinID:CBI38025.3	UniProt:D7U5K6	EMBL:FN596508	GO:GO:0000785	GO:GO:0000976
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005677	GO:GO:0006139
GO:GO:0006342	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0031507	GO:GO:0040029	GO:GO:0046872	InterPro:IPR001025	InterPro:IPR013083	InterPro:IPR019787
EntrezGene:LOC100252013	wikigene:LOC100252013	PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359	PFscan:PS50016
PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249	SMART:SM00439	SUPFAM:SSF57903
TIGR:TC57693	UniParc:UPI0001BE4D73	ArrayExpress:VIT_03s0038g00160	EnsemblPlantsGene:VIT_03s0038g00160	EnsemblPlants:VIT_03s0038g00160.t01	unigene:Vvi.11767
unigene:Vvi.1563	RefSeq:XP_002263493	RefSeq:XP_002263493.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD
InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	:	:	:	:

Description

No Description!

Coordinates

chr3:+:120149..125174

Molecular Weight (calculated)

24718.0 Da

IEP (calculated)

8.259

GRAVY (calculated)

-0.818

Length

215 amino acids

Sequence
(BLAST)

001: MAKARAPRRT LDSYTIKSIN KTIRAGDCVL MRPSDSSKPS YVAKVEKIES DGRGSVKVHV RWYYRPEESI GGRRQFHGSK EVFLSDHYDV QSADTIEGKC
101: TVHTFKSYTK LDAVGNDDFF CRFEYNSSTG AFNPDRVAVY CKCEMPYNPD DLMVQCEGCT DWFHPACIDM TPEEAKRLEH FFCQNCSSED QKKLLNSHNA
201: SRHSDAKVDT KRRRR

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.