CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60792	Soybean	nucleus	98.15	98.15
VIT_03s0038g00160.t01	Wine grape	nucleus	85.65	86.05
Solyc01g110020.2.1	Tomato	nucleus	80.09	80.09
PGSC0003DMT400079501	Potato	nucleus	76.85	78.67
KRG99457	Soybean	cytosol	33.33	75.0
GSMUA_Achr9P25510_001	Banana	nucleus	67.59	67.91
KRH26200	Soybean	nucleus	66.67	66.67
KRH55144	Soybean	nucleus	65.74	65.74
KRH27310	Soybean	nucleus	65.74	65.74
Zm00001d019039_P002	Maize	extracellular	65.74	64.84
Os07t0186400-01	Rice	nucleus	65.28	64.68
AT4G39100.1	Thale cress	nucleus	67.59	64.04
HORVU2Hr1G054100.1	Barley	nucleus	64.35	63.76
CDY12119	Canola	nucleus	67.13	63.32
TraesCS2B01G257000.1	Wheat	nucleus	63.89	63.3
TraesCS2D01G242500.1	Wheat	nucleus	63.89	63.3
KRH22009	Soybean	nucleus	65.74	62.56
Os03t0799600-01	Rice	nucleus	62.5	61.93
TraesCS5D01G453200.1	Wheat	nucleus	63.89	60.79
TraesCS5A01G445200.2	Wheat	nucleus	63.89	60.79
TraesCS2A01G227100.2	Wheat	nucleus	62.96	60.71
TraesCS5B01G450300.1	Wheat	nucleus	63.89	60.26
OQU88587	Sorghum	nucleus	64.35	52.65
HORVU5Hr1G106800.2	Barley	nucleus, plastid	63.89	51.11
CDX90311	Canola	nucleus	67.59	43.45
Bra010705.1-P	Field mustard	nucleus	67.59	43.45

Protein Annotations

EntrezGene:100787968	MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:2.60.120.650	EMBL:ACUP02003377	InterPro:BAH_dom
EnsemblPlantsGene:GLYMA_06G009400	GO:GO:0000785	GO:GO:0000976	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003682	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005677	GO:GO:0006139	GO:GO:0006342	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0031507	GO:GO:0040029	GO:GO:0046872
UniProt:I1K738	InterPro:IPR001025	InterPro:IPR019787	EnsemblPlants:KRH51480	ProteinID:KRH51480	ProteinID:KRH51480.1
PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505
PANTHER:PTHR12505:SF39	SMART:SM00249	SMART:SM00439	SUPFAM:SSF57903	UniParc:UPI00023398C7	InterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:744940..748193

Molecular Weight (calculated)

24819.2 Da

IEP (calculated)

8.264

GRAVY (calculated)

-0.753

Length

216 amino acids

Sequence
(BLAST)

001: MAKPKAPRRT LESYSVKHIS KTIRAGDCIL MRPSDPSKPS YVARIERIEA DARGANVKIH VRWYYRPEES IGGRRQFHGS KEVFLSDHFD VQSADTIEAK
101: CTVHSFKSYT KLDAVGNDDF FCRFEYNSST GAFNPDRVAV YCKCEMPYNP DDLMVQCEGC TDWFHPACID MTVEEAKRLD HFFCESCSAE GQKKLQNSHS
201: ASRHSDTKVD TKRRRR

Best Arabidopsis Sequence Match ( AT4G39100.1 )
(BLAST)

001: MPKQKAPRKQ LKSYKLKHIN KSIQEGDAVL MRSSEPGKPS YVARVEAIET DARGSHAKVR VRWYYRPEES IGGRRQFHGA KEVFLSDHFD FQSADTIEGK
101: CKVHSFSSYT KLDSVGNDDF FCRFEYNSTT GAFDPDRVTV FCKCEMPYNP DDLMVQCEEC SEWFHPSCIG TTIEEAKKPD NFYCEECSPQ QQNLHNSNST
201: SNNRDAKVNG KRSLEVTKSK NKHTKRPG

Arabidopsis Description

SHLSHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.