CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55144	Soybean	nucleus	98.15	98.15
KRH27310	Soybean	nucleus	96.76	96.76
KRH22009	Soybean	nucleus	94.44	89.87
VIT_10s0116g00160.t01	Wine grape	nucleus	84.72	85.12
CDX94078	Canola	cytosol	86.11	83.04
CDX98731	Canola	cytosol	86.11	83.04
Bra019395.1-P	Field mustard	nucleus	85.65	82.59
GSMUA_Achr3P08070_001	Banana	nucleus	82.41	82.41
CDX79127	Canola	cytosol	85.19	82.14
CDX82909	Canola	cytosol	84.72	81.7
GSMUA_Achr7P02260_001	Banana	nucleus	80.56	80.56
CDX76384	Canola	cytosol	83.33	80.36
CDY27445	Canola	cytosol	82.87	79.91
AT4G22140.3	Thale cress	cytosol	82.87	76.5
GSMUA_Achr4P11410_001	Banana	nucleus	76.39	76.39
Os09t0386500-01	Rice	nucleus	76.39	76.39
Bra013592.1-P	Field mustard	nucleus	81.48	76.19
TraesCS5D01G208000.1	Wheat	nucleus	75.46	75.46
TraesCS5B01G200300.1	Wheat	nucleus	75.0	75.0
Os08t0421900-01	Rice	nucleus	73.15	73.15
EER96695	Sorghum	nucleus	73.15	73.15
PGSC0003DMT400043085	Potato	nucleus	69.91	71.56
HORVU5Hr1G059960.1	Barley	cytosol, nucleus, plastid	72.22	71.56
Zm00001d050330_P003	Maize	cytosol, nucleus, plastid	71.3	71.3
Zm00001d020361_P001	Maize	cytosol, nucleus, plastid	70.83	71.16
KRH60792	Soybean	nucleus	67.13	67.13
KRH51480	Soybean	nucleus	66.67	66.67
AT4G04260.2	Thale cress	cytosol	63.43	66.5
Solyc02g081130.1.1	Tomato	nucleus	63.89	65.4
GSMUA_Achr10P...	Banana	cytosol	68.06	63.64
Zm00001d032263_P001	Maize	cytosol, nucleus, plastid	60.19	63.41
GSMUA_Achr8P22620_001	Banana	cytosol	80.56	63.04
Bra020856.1-P	Field mustard	nucleus	80.56	61.05
KRG99457	Soybean	cytosol	25.93	58.33
KXG25172	Sorghum	mitochondrion, plastid	73.15	57.45
TraesCS5A01G201700.1	Wheat	nucleus, plastid	75.0	56.84
HORVU5Hr1G059970.1	Barley	mitochondrion	75.0	50.62
GSMUA_Achr2P18690_001	Banana	cytosol	40.74	44.67
Zm00001d005705_P001	Maize	plastid	50.0	43.72

Protein Annotations

EntrezGene:100800806	MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	EMBL:ACUP02007599	InterPro:BAH_dom
EnsemblPlantsGene:GLYMA_12G158800	GO:GO:0000785	GO:GO:0000976	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003682	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005677	GO:GO:0006139	GO:GO:0006342	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0031507	GO:GO:0040029	GO:GO:0046872
UniProt:I1LSW2	InterPro:IPR001025	InterPro:IPR013083	InterPro:IPR019787	EnsemblPlants:KRH26200	ProteinID:KRH26200
ProteinID:KRH26200.1	PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038
PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249	SMART:SM00439	SUPFAM:SSF57903	UniParc:UPI0001BA850D
InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	:

Description

hypothetical protein

Coordinates

chr12:+:26882854..26888267

Molecular Weight (calculated)

24738.3 Da

IEP (calculated)

8.393

GRAVY (calculated)

-0.783

Length

216 amino acids

Sequence
(BLAST)

001: MAKTRPGRKD VDSYTIRGTS KIVRAGDCVL MRPSDTSKPP YVARVEKIEQ DNRSNVKVRV RWYYRPEESI GGRRQFHGAK ELFLSDHYDV QSAHTIEGKC
101: VVHSFKNYTK LENVGAEDYY CRFEYKAATG AFTPDRVAVY CKCEMPYNPD DLMVQCEGCK DWYHPACMGM TIEEAKKLDH FVCSECSSDD DMKKPQATFS
201: ASLGADGKVE PKRRKR

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.