CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020361_P001	Maize	cytosol, nucleus, plastid	94.44	94.88
TraesCS5D01G208000.1	Wheat	nucleus	87.96	87.96
TraesCS5B01G200300.1	Wheat	nucleus	87.5	87.5
Os09t0386500-01	Rice	nucleus	85.65	85.65
HORVU5Hr1G059960.1	Barley	cytosol, nucleus, plastid	85.65	84.86
VIT_12s0059g01180.t01	Wine grape	nucleus	77.31	77.67
Solyc05g042030.2.1	Tomato	nucleus	75.0	76.42
Solyc07g049210.2.1	Tomato	nucleus	75.46	75.46
KRH27310	Soybean	nucleus	75.0	75.0
GSMUA_Achr4P11410_001	Banana	nucleus	75.0	75.0
KRH26200	Soybean	nucleus	73.15	73.15
KRH55144	Soybean	nucleus	73.15	73.15
PGSC0003DMT400043916	Potato	nucleus	75.46	71.49
KRH22009	Soybean	nucleus	74.07	70.48
CDX98731	Canola	cytosol	71.76	69.2
CDX94078	Canola	cytosol	71.76	69.2
Bra019395.1-P	Field mustard	nucleus	70.83	68.3
CDX82909	Canola	cytosol	70.83	68.3
PGSC0003DMT400001796	Potato	nucleus	73.61	67.95
CDY27445	Canola	cytosol	70.37	67.86
CDX79127	Canola	cytosol	70.37	67.86
CDX76384	Canola	cytosol	69.91	67.41
TraesCS5A01G201700.1	Wheat	nucleus, plastid	87.5	66.32
KXG25172	Sorghum	mitochondrion, plastid	81.94	64.36
AT4G22140.3	Thale cress	cytosol	68.98	63.68
Bra013592.1-P	Field mustard	nucleus	68.06	63.64
HORVU5Hr1G059970.1	Barley	mitochondrion	87.5	59.06
AT4G04260.2	Thale cress	cytosol	54.63	57.28
Zm00001d005705_P001	Maize	plastid	62.96	55.06
Bra020856.1-P	Field mustard	nucleus	68.06	51.58
OQU88587	Sorghum	nucleus	61.11	50.0
CDX94076	Canola	cytosol	13.89	22.73

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:2.60.120.650	EntrezGene:8056218	InterPro:BAH_dom	UniProt:C5XC21
EnsemblPlants:EER96695	ProteinID:EER96695	ProteinID:EER96695.1	GO:GO:0000785	GO:GO:0000976	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005677	GO:GO:0006139	GO:GO:0006342
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0031507
GO:GO:0040029	GO:GO:0046872	InterPro:IPR001025	InterPro:IPR019787	PFAM:PF00628	PFAM:PF01426
ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249
SMART:SM00439	EnsemblPlantsGene:SORBI_3002G192500	SUPFAM:SSF57903	UniParc:UPI0001A83AC6	RefSeq:XP_002460174.1	InterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:57890042..57895726

Molecular Weight (calculated)

24692.3 Da

IEP (calculated)

8.940

GRAVY (calculated)

-0.852

Length

216 amino acids

Sequence
(BLAST)

001: MAKTKQGKRD VDAYTIKGTN KVVRVGDCVL MRPADTDKPP YVARVERMES DGRGGVRVRV RWYYRPEEAK GGRRPFHGAK ELFLSDHFDT QSAHTIEGKC
101: IVHSFKSYTK LDNVGPEDFY CRFDYKASTG AFTPDRVAVY CKCEMPYNPD DLMVQCEGCK DWFHPSCMGM TIEQAKKIDH YMCSDCAKEN GAKRPSNSYP
201: VSPNSDSKIE SKRRKR

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.