Factsheet for Bra019395.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98731	Canola	cytosol	98.21	98.21
Bra013592.1-P	Field mustard	nucleus	93.75	90.91
AT4G22140.3	Thale cress	cytosol	94.64	90.6
KRH27310	Soybean	nucleus	83.93	87.04
KRH55144	Soybean	nucleus	82.59	85.65
KRH26200	Soybean	nucleus	82.59	85.65
KRH22009	Soybean	nucleus	84.38	83.26
VIT_10s0116g00160.t01	Wine grape	nucleus	79.46	82.79
GSMUA_Achr3P08070_001	Banana	nucleus	77.68	80.56
GSMUA_Achr7P02260_001	Banana	nucleus	77.68	80.56
GSMUA_Achr4P11410_001	Banana	nucleus	73.21	75.93
TraesCS5D01G208000.1	Wheat	nucleus	70.54	73.15
Bra020856.1-P	Field mustard	nucleus	92.86	72.98
TraesCS5B01G200300.1	Wheat	nucleus	70.09	72.69
Os09t0386500-01	Rice	nucleus	70.09	72.69
Zm00001d050330_P003	Maize	cytosol, nucleus, plastid	69.2	71.76
PGSC0003DMT400043085	Potato	nucleus	67.41	71.56
EER96695	Sorghum	nucleus	68.3	70.83
Os08t0421900-01	Rice	nucleus	67.41	69.91
HORVU5Hr1G059960.1	Barley	cytosol, nucleus, plastid	67.86	69.72
Zm00001d020361_P001	Maize	cytosol, nucleus, plastid	65.62	68.37
Solyc02g081130.1.1	Tomato	nucleus	61.61	65.4
GSMUA_Achr10P...	Banana	cytosol	66.07	64.07
GSMUA_Achr8P22620_001	Banana	cytosol	77.23	62.68
Zm00001d032263_P001	Maize	cytosol, nucleus, plastid	56.25	61.46
KXG25172	Sorghum	mitochondrion, plastid	69.64	56.73
TraesCS5A01G201700.1	Wheat	nucleus, plastid	70.09	55.09
HORVU5Hr1G059970.1	Barley	mitochondrion	70.09	49.06
GSMUA_Achr2P18690_001	Banana	cytosol	38.39	43.65
Zm00001d005705_P001	Maize	plastid	45.98	41.7
Bra010705.1-P	Field mustard	nucleus	58.48	38.99

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	InterPro:BAH_dom	EnsemblPlantsGene:Bra019395	EnsemblPlants:Bra019395.1
EnsemblPlants:Bra019395.1-P	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001025
InterPro:IPR013083	InterPro:IPR019787	UniProt:M4DSA2	PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359
PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249	SMART:SM00439
SUPFAM:SSF57903	UniParc:UPI0002540D2A	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger
InterPro:Znf_RING/FYVE/PHD	:	:	:	:	:

Description

AT4G22140 (E=7e-132) | DNA binding / protein binding / zinc ion binding

Coordinates

chrA03:-:24475450..24477273

Molecular Weight (calculated)

25373.1 Da

IEP (calculated)

8.340

GRAVY (calculated)

-0.707

Length

224 amino acids

Sequence
(BLAST)

001: MAKTRPGVPS KIKTGRKELD SYTIKGTNKL VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYSCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFAAS PADDVKVETK RRKR

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.