Factsheet for GSMUA_Achr10P01360_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P02260_001	Banana	nucleus	71.0	75.93
GSMUA_Achr3P08070_001	Banana	nucleus	70.56	75.46
KRH27310	Soybean	nucleus	65.8	70.37
GSMUA_Achr4P11410_001	Banana	nucleus	64.94	69.44
KRH55144	Soybean	nucleus	63.64	68.06
KRH26200	Soybean	nucleus	63.64	68.06
KRH22009	Soybean	nucleus	66.23	67.4
CDX94078	Canola	cytosol	64.5	66.52
Bra019395.1-P	Field mustard	nucleus	64.07	66.07
CDX98731	Canola	cytosol	64.07	66.07
CDX82909	Canola	cytosol	63.64	65.62
CDX76384	Canola	cytosol	63.2	65.18
CDX79127	Canola	cytosol	63.2	65.18
CDY27445	Canola	cytosol	62.77	64.73
AT4G22140.3	Thale cress	cytosol	63.64	62.82
Bra013592.1-P	Field mustard	nucleus	62.77	62.77
GSMUA_Achr9P25510_001	Banana	nucleus	56.71	60.93
GSMUA_Achr8P22620_001	Banana	cytosol	71.0	59.42
AT4G04260.2	Thale cress	cytosol	48.48	54.37
Bra020856.1-P	Field mustard	nucleus	62.34	50.53
GSMUA_Achr2P18690_001	Banana	cytosol	38.53	45.18
CDX94076	Canola	cytosol	6.93	12.12

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	InterPro:BAH_dom	GO:GO:0003674	GO:GO:0003682
GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr10G01360_001
EnsemblPlants:GSMUA_Achr10P01360_001	EnsemblPlants:GSMUA_Achr10T01360_001	InterPro:IPR001025	InterPro:IPR013083	UniProt:M0REG3	PFAM:PF01426
PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00439	SUPFAM:SSF57903	TMHMM:TMhelix
UniParc:UPI000295B8FF	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G01360_001]

Coordinates

chr10:+:3267382..3268266

Molecular Weight (calculated)

26550.0 Da

IEP (calculated)

8.635

GRAVY (calculated)

-0.236

Length

231 amino acids

Sequence
(BLAST)

001: MAKTKPGKKD LDSYTIKSTN KVVKVGDCVL MRPAESGKPP YVARVEKIEA DHRNNVRVRV RWYYRPEESI GGRRQFHGAK ELFLSDHYDV QSAHTIEGKC
101: IVHSFKNYTK LENVGAEDYF CRFEYKAATG AFTPDRIAVY CKCEMPYNPD DLMVQCEGCK DWQVTSANLS NSALFCFSST VPCLLGIFLL TLFYLLMKFY
201: RYASCCLPVL FCSFKQGENY RNIKILSFVF S

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.