Factsheet for Bra013592.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82909	Canola	cytosol	93.51	96.43
CDX79127	Canola	cytosol	93.07	95.98
Bra019395.1-P	Field mustard	nucleus	90.91	93.75
AT4G22140.3	Thale cress	cytosol	91.34	90.17
KRH27310	Soybean	nucleus	77.49	82.87
KRH55144	Soybean	nucleus	76.19	81.48
KRH26200	Soybean	nucleus	76.19	81.48
VIT_10s0116g00160.t01	Wine grape	nucleus	74.46	80.0
KRH22009	Soybean	nucleus	77.92	79.3
GSMUA_Achr3P08070_001	Banana	nucleus	72.29	77.31
GSMUA_Achr7P02260_001	Banana	nucleus	72.29	77.31
GSMUA_Achr4P11410_001	Banana	nucleus	68.4	73.15
Bra020856.1-P	Field mustard	nucleus	89.61	72.63
TraesCS5D01G208000.1	Wheat	nucleus	65.37	69.91
TraesCS5B01G200300.1	Wheat	nucleus	65.37	69.91
HORVU5Hr1G059960.1	Barley	cytosol, nucleus, plastid	65.8	69.72
PGSC0003DMT400043085	Potato	nucleus	63.64	69.67
Os09t0386500-01	Rice	nucleus	64.94	69.44
Zm00001d050330_P003	Maize	cytosol, nucleus, plastid	64.5	68.98
Zm00001d020361_P001	Maize	cytosol, nucleus, plastid	63.64	68.37
EER96695	Sorghum	nucleus	63.64	68.06
Os08t0421900-01	Rice	nucleus	62.77	67.13
Solyc02g081130.1.1	Tomato	nucleus	59.31	64.93
GSMUA_Achr10P...	Banana	cytosol	62.77	62.77
Zm00001d032263_P001	Maize	cytosol, nucleus, plastid	54.11	60.98
GSMUA_Achr8P22620_001	Banana	cytosol	71.86	60.14
KXG25172	Sorghum	mitochondrion, plastid	64.07	53.82
TraesCS5A01G201700.1	Wheat	nucleus, plastid	65.37	52.98
HORVU5Hr1G059970.1	Barley	mitochondrion	65.37	47.19
GSMUA_Achr2P18690_001	Banana	cytosol	36.36	42.64
Zm00001d005705_P001	Maize	plastid	44.59	41.7
Bra010705.1-P	Field mustard	nucleus	55.41	38.1

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	InterPro:BAH_dom	EnsemblPlantsGene:Bra013592	EnsemblPlants:Bra013592.1
EnsemblPlants:Bra013592.1-P	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001025
InterPro:IPR013083	InterPro:IPR019787	UniProt:M4DAT2	PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359
PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249	SMART:SM00439
SUPFAM:SSF57903	UniParc:UPI000254554C	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger
InterPro:Znf_RING/FYVE/PHD	:	:	:	:	:

Description

AT4G22140 (E=9e-129) | DNA binding / protein binding / zinc ion binding

Coordinates

chrA01:-:6531480..6533062

Molecular Weight (calculated)

25889.7 Da

IEP (calculated)

7.601

GRAVY (calculated)

-0.547

Length

231 amino acids

Sequence
(BLAST)

001: MAKTRPGVPS KIKTGRKELD SYTIKGTNKV VRAGECVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: GHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPGCVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTAS PADDVKITLA STALCAPLPC H

Best Arabidopsis Sequence Match ( AT4G22140.1 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVRLS LFSHLLYRCS ITYL

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.