CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050330_P003	Maize	cytosol, nucleus, plastid	73.82	93.98
Os08t0421900-01	Rice	nucleus	71.64	91.2
EER96695	Sorghum	nucleus	64.36	81.94
VIT_12s0059g01180.t01	Wine grape	nucleus	61.09	78.14
Solyc07g049210.2.1	Tomato	nucleus	59.27	75.46
Solyc05g042030.2.1	Tomato	nucleus	57.82	75.0
Zm00001d032263_P001	Maize	cytosol, nucleus, plastid	55.64	74.63
GSMUA_Achr4P11410_001	Banana	nucleus	58.18	74.07
KRH27310	Soybean	nucleus	58.18	74.07
KRH26200	Soybean	nucleus	57.45	73.15
KRH55144	Soybean	nucleus	57.09	72.69
CDX98731	Canola	cytosol	56.73	69.64
Bra019395.1-P	Field mustard	nucleus	56.73	69.64
CDX94078	Canola	cytosol	56.36	69.2
KRH22009	Soybean	nucleus	57.09	69.16
PGSC0003DMT400043916	Potato	nucleus	57.09	68.86
PGSC0003DMT400001796	Potato	nucleus	58.55	68.8
CDX82909	Canola	cytosol	55.27	67.86
CDX79127	Canola	cytosol	55.27	67.86
CDX76384	Canola	cytosol	54.55	66.96
CDY27445	Canola	cytosol	54.18	66.52
AT4G22140.3	Thale cress	cytosol	54.91	64.53
Bra013592.1-P	Field mustard	nucleus	53.82	64.07
AT4G04260.2	Thale cress	cytosol	43.27	57.77
Bra020856.1-P	Field mustard	nucleus	53.09	51.23
OQU88587	Sorghum	nucleus	48.36	50.38
CDX94076	Canola	cytosol	10.55	21.97

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	EntrezGene:8075625	UniProt:A0A1B6PHL5	InterPro:BAH_dom
GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001025	InterPro:IPR013083
InterPro:IPR019787	EnsemblPlants:KXG25172	ProteinID:KXG25172	ProteinID:KXG25172.1	PFAM:PF00628	PFAM:PF01426
ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249
SMART:SM00439	EnsemblPlantsGene:SORBI_3007G130300	SUPFAM:SSF57903	unigene:Sbi.12977	UniParc:UPI00081AE060	InterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:+:54702207..54708409

Molecular Weight (calculated)

31094.9 Da

IEP (calculated)

9.542

GRAVY (calculated)

-0.780

Length

275 amino acids

Sequence
(BLAST)

001: MASDQRAPSR RPPPRACTRA RAAPPLTRAA MADVARAATN PPDPTSRFLP LQIRPRSTAM AKTKQGKKDV DSYTIRGTNK LVHVGDCVLM RASDSDNQPY
101: VARVEKMEAD GRGSVRVRVR WYYRPEESKG GRRQFHGAKE LFLSDHFDLQ SAHTIEGKCV VHSFKNYTKL DNVGPEDFFC RFEYKAATGS FTPDRVAVYC
201: KCEMPYNPDD LMVQCDACKD WFHPSCMSMT IEQAKKLDHF VCSDCLKENG SKRLSNAYAT SPNSEPKAES KRQRR

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.