Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX94078 | Canola | cytosol | 40.91 | 24.11 |
| CDX98731 | Canola | cytosol | 40.91 | 24.11 |
| CDX79127 | Canola | cytosol | 39.39 | 23.21 |
| CDX82909 | Canola | cytosol | 39.39 | 23.21 |
| CDY27445 | Canola | cytosol | 37.88 | 22.32 |
| CDX76384 | Canola | cytosol | 37.88 | 22.32 |
| VIT_10s0116g00160.t01 | Wine grape | nucleus | 28.79 | 17.67 |
| GSMUA_Achr7P02260_001 | Banana | nucleus | 28.79 | 17.59 |
| GSMUA_Achr3P08070_001 | Banana | nucleus | 27.27 | 16.67 |
| GSMUA_Achr4P11410_001 | Banana | nucleus | 26.52 | 16.2 |
| Os09t0386500-01 | Rice | nucleus | 25.0 | 15.28 |
| TraesCS5D01G208000.1 | Wheat | nucleus | 24.24 | 14.81 |
| TraesCS5B01G200300.1 | Wheat | nucleus | 24.24 | 14.81 |
| HORVU5Hr1G059960.1 | Barley | cytosol, nucleus, plastid | 23.48 | 14.22 |
| PGSC0003DMT400043085 | Potato | nucleus | 22.73 | 14.22 |
| Zm00001d020361_P001 | Maize | cytosol, nucleus, plastid | 22.73 | 13.95 |
| EER96695 | Sorghum | nucleus | 22.73 | 13.89 |
| GSMUA_Achr8P22620_001 | Banana | cytosol | 28.79 | 13.77 |
| Zm00001d050330_P003 | Maize | cytosol, nucleus, plastid | 21.97 | 13.43 |
| Solyc02g081130.1.1 | Tomato | nucleus | 21.21 | 13.27 |
| CDY12119 | Canola | nucleus | 21.97 | 12.66 |
| Os08t0421900-01 | Rice | nucleus | 20.45 | 12.5 |
| TraesCS5A01G201700.1 | Wheat | nucleus, plastid | 24.24 | 11.23 |
| KXG25172 | Sorghum | mitochondrion, plastid | 21.97 | 10.55 |
| HORVU5Hr1G059970.1 | Barley | mitochondrion | 24.24 | 10.0 |
| CDX90311 | Canola | nucleus | 21.97 | 8.63 |
| GSMUA_Achr10P... | Banana | cytosol | 12.12 | 6.93 |
| GSMUA_Achr2P18690_001 | Banana | cytosol | 8.33 | 5.58 |
| Zm00001d032263_P001 | Maize | cytosol, nucleus, plastid | 6.82 | 4.39 |
| Zm00001d005705_P001 | Maize | plastid | 2.27 | 1.21 |
Protein Annotations
| EnsemblPlants:CDX94076 | EnsemblPlantsGene:GSBRNA2T00156981001 | Gene3D:3.30.40.10 | InterPro:IPR013083 | InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD |
| ProteinID:CDX94076 | ProteinID:CDX94076.1 | SUPFAM:SSF57903 | UniParc:UPI0004EDC0BD | MapMan:35.1 | : |
Description
BnaC07g37100D
Coordinates
chrLK031879:-:535720..538173
Molecular Weight (calculated)
15085.9 Da
IEP (calculated)
8.488
GRAVY (calculated)
-0.650
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MKASRGCTSS HKKYQNEGCK DWYHPACVGM TIEEAKKLDH FVCAECSSDD DVKKSQNGFA ASPADDVKVR LFRIYKASLR VQKLEADFNN GIVVFRWKRS
101: AEKDNVEGVL MGTKPQGGWE ISHNLEPLWW RF
101: AEKDNVEGVL MGTKPQGGWE ISHNLEPLWW RF
001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVRLS LFSHLLYRCS ITYL
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVRLS LFSHLLYRCS ITYL
Arabidopsis Description
EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.