Factsheet for Solyc02g081130.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043085	Potato	nucleus	88.63	88.63
VIT_10s0116g00160.t01	Wine grape	nucleus	68.25	66.98
KRH27310	Soybean	nucleus	66.82	65.28
Solyc05g042030.2.1	Tomato	nucleus	65.4	65.09
KRH26200	Soybean	nucleus	65.4	63.89
Solyc07g049210.2.1	Tomato	nucleus	64.93	63.43
KRH55144	Soybean	nucleus	64.45	62.96
CDX94078	Canola	cytosol	66.35	62.5
KRH22009	Soybean	nucleus	66.82	62.11
CDX82909	Canola	cytosol	65.88	62.05
CDX98731	Canola	cytosol	65.4	61.61
CDX79127	Canola	cytosol	65.4	61.61
CDX76384	Canola	cytosol	65.4	61.61
Bra019395.1-P	Field mustard	nucleus	65.4	61.61
CDY27445	Canola	cytosol	64.93	61.16
Bra013592.1-P	Field mustard	nucleus	64.93	59.31
AT4G22140.3	Thale cress	cytosol	65.4	58.97
Solyc01g110020.2.1	Tomato	nucleus	58.29	56.94
AT4G04260.2	Thale cress	cytosol	53.55	54.85
Bra020856.1-P	Field mustard	nucleus	64.45	47.72
CDX94076	Canola	cytosol	13.27	21.21

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	InterPro:BAH_dom	GO:GO:0000785	GO:GO:0000976
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005677	GO:GO:0006139
GO:GO:0006342	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0031507	GO:GO:0040029	GO:GO:0046872	InterPro:IPR001025	InterPro:IPR013083	InterPro:IPR019787
UniProt:K4B9Y3	PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038
PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249	SMART:SM00439	SUPFAM:SSF57903	EnsemblPlantsGene:Solyc02g081130.1
EnsemblPlants:Solyc02g081130.1.1	UniParc:UPI00027675BF	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger
InterPro:Znf_RING/FYVE/PHD	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:45200362..45203910

Molecular Weight (calculated)

24090.7 Da

IEP (calculated)

8.256

GRAVY (calculated)

-0.635

Length

211 amino acids

Sequence
(BLAST)

001: MAKRPEKRNL PLHIITGTTN VVRVGDCVLM RPSENDKAPY VARVDKIEAD KNKHTFVHVT WYYRPEESMG GRREFHGSKE LFLSDHHDVQ SAYTIEGKCT
101: VHTFKNYTKL KCVGPDDYYS RFEYKVATGD FIPDRVAVYC KCEMPYNPDD LMVQCEHCKD WYHPGCVGLT TEQTKQLAEF VCSDCSASLK KSVNTPVPLS
201: SGKAVPKRQK S

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.