Factsheet for PGSC0003DMT400001796

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g049210.2.1	Tomato	nucleus	86.75	93.98
VIT_12s0059g01180.t01	Wine grape	nucleus	82.05	89.3
GSMUA_Achr7P02260_001	Banana	nucleus	76.07	82.41
PGSC0003DMT400043916	Potato	nucleus	79.91	82.02
GSMUA_Achr3P08070_001	Banana	nucleus	74.79	81.02
TraesCS5B01G200300.1	Wheat	nucleus	70.09	75.93
TraesCS5D01G208000.1	Wheat	nucleus	70.09	75.93
Os09t0386500-01	Rice	nucleus	69.66	75.46
HORVU5Hr1G059960.1	Barley	cytosol, nucleus, plastid	69.66	74.77
Zm00001d020361_P001	Maize	cytosol, nucleus, plastid	67.95	73.95
Os08t0421900-01	Rice	nucleus	67.95	73.61
EER96695	Sorghum	nucleus	67.95	73.61
Zm00001d050330_P003	Maize	cytosol, nucleus, plastid	66.67	72.22
PGSC0003DMT400043085	Potato	nucleus	62.82	69.67
GSMUA_Achr8P22620_001	Banana	cytosol	77.35	65.58
PGSC0003DMT400079501	Potato	nucleus	58.97	65.4
Zm00001d032263_P001	Maize	cytosol, nucleus, plastid	57.27	65.37
KXG25172	Sorghum	mitochondrion, plastid	68.8	58.55
TraesCS5A01G201700.1	Wheat	nucleus, plastid	70.09	57.54
HORVU5Hr1G059970.1	Barley	mitochondrion	70.09	51.25
Zm00001d005705_P001	Maize	plastid	46.58	44.13

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	InterPro:BAH_dom	GO:GO:0003674	GO:GO:0003682
GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	InterPro:IPR001025
InterPro:IPR013083	InterPro:IPR019787	UniProt:M0ZJ39	PFAM:PF00628	PFAM:PF01426	EnsemblPlantsGene:PGSC0003DMG400000673
PGSC:PGSC0003DMG400000673	EnsemblPlants:PGSC0003DMT400001796	ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505
PANTHER:PTHR12505:SF39	SMART:SM00249	SMART:SM00439	SUPFAM:SSF57903	TMHMM:TMhelix	UniParc:UPI000294FED9
InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	:

Description

Phd finger transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400000673]

Coordinates

chr7:-:44935632..44941557

Molecular Weight (calculated)

26736.8 Da

IEP (calculated)

6.969

GRAVY (calculated)

-0.538

Length

234 amino acids

Sequence
(BLAST)

001: MAKTKPGKKD LDSYSIKGTN KVVRPGDCVL MRPSDSDKPP YVAEIEKLEA DHRNNVKVRV RWYYRPEESI GGRRQFHGAK ELFLSDHFDV QSAHTIEGKC
101: IVHSFKNYTK LENVGPEDYF CRFEYKAATG GFTPDRVAVY CKCEMPYNPD DLMVQCEGCK DWFHPSCMGM TIDEAKKLEH FLCSDCSSED ETKRPLNSFH
201: VSPPDEAKVK TLYTHLVNFY MILLVISASI VSPS

Best Arabidopsis Sequence Match ( AT4G22140.1 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVRLS LFSHLLYRCS ITYL

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.