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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 1
  • vacuole 6
  • extracellular 5
  • endoplasmic reticulum 6
  • plasma membrane 4
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:nucleus, secretory
BaCelLo:nucleus
EpiLoc:vacuole
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:vacuole
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:endoplasmic reticulum
 nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
mitochondrion: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH15406 Soybean nucleus 94.96 91.13
VIT_18s0001g09990.t01 Wine grape endoplasmic reticulum 71.22 72.59
CDY63586 Canola endoplasmic reticulum 67.23 69.72
CDY17044 Canola endoplasmic reticulum 67.02 69.5
KRH61341 Soybean endoplasmic reticulum, extracellular, vacuole 53.57 69.48
CDX71540 Canola extracellular 66.6 68.91
Bra014057.1-P Field mustard endoplasmic reticulum 66.39 68.85
Bra033657.1-P Field mustard extracellular 66.39 68.7
CDY22370 Canola extracellular 66.39 68.7
AT1G47128.1 Thale cress endoplasmic reticulum 66.39 68.4
CDY17093 Canola endoplasmic reticulum 65.34 68.05
GSMUA_Achr4P06140_001 Banana endoplasmic reticulum 66.39 67.38
KXG27269 Sorghum endoplasmic reticulum 65.55 67.24
Bra040749.1-P Field mustard endoplasmic reticulum 64.5 67.18
CDY25228 Canola extracellular 64.92 67.17
GSMUA_Achr1P15920_001 Banana endoplasmic reticulum 66.18 67.02
CDY06760 Canola endoplasmic reticulum 64.29 66.96
AT5G43060.1 Thale cress endoplasmic reticulum 65.13 66.95
GSMUA_Achr3P01000_001 Banana endoplasmic reticulum 65.76 66.74
Zm00001d002065_P006 Maize plasma membrane 65.13 66.24
KRH04538 Soybean extracellular 50.42 65.57
KRH57968 Soybean endoplasmic reticulum 50.21 65.3
GSMUA_Achr10P... Banana endoplasmic reticulum 64.29 65.25
TraesCS2B01G540100.2 Wheat golgi 63.45 65.23
TraesCS2A01G512100.1 Wheat extracellular 63.03 65.08
Solyc12g088670.1.1 Tomato endoplasmic reticulum 63.66 65.02
TraesCS2D01G513600.1 Wheat endoplasmic reticulum, golgi, vacuole 63.24 65.01
GSMUA_Achr4P12910_001 Banana endoplasmic reticulum 64.5 64.9
PGSC0003DMT400020654 Potato cytosol 60.29 64.79
KRH07581 Soybean endoplasmic reticulum 49.58 64.48
Zm00001d026458_P002 Maize endoplasmic reticulum 64.92 64.38
CDY17193 Canola endoplasmic reticulum 42.65 63.84
GSMUA_Achr8P03350_001 Banana endoplasmic reticulum, extracellular, vacuole 44.12 63.06
HORVU2Hr1G113460.2 Barley plasma membrane 64.5 62.78
Solyc04g078540.2.1 Tomato endoplasmic reticulum 61.97 62.5
GSMUA_Achr1P09800_001 Banana endoplasmic reticulum 60.08 60.47
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular, golgi 41.18 57.14
CDY27951 Canola endoplasmic reticulum 54.83 56.86
KRH60879 Soybean endoplasmic reticulum 39.92 54.44
KRH51561 Soybean endoplasmic reticulum 39.5 53.71
KRH55771 Soybean cytosol, nucleus 31.3 53.21
KRH51560 Soybean endoplasmic reticulum 39.08 53.14
KRH60878 Soybean endoplasmic reticulum 38.87 53.01
KRH29892 Soybean extracellular, golgi, vacuole 37.4 51.9
KRH25039 Soybean extracellular, golgi, vacuole 34.03 51.76
KRH25729 Soybean endoplasmic reticulum, golgi 36.76 51.02
KRG88605 Soybean endoplasmic reticulum, golgi 36.76 51.02
KRG88601 Soybean endoplasmic reticulum, golgi 36.55 50.73
KRH25765 Soybean endoplasmic reticulum, golgi 36.34 50.44
KRH54277 Soybean endoplasmic reticulum 38.24 50.28
KRH63669 Soybean endoplasmic reticulum 38.24 50.28
KRH55752 Soybean endoplasmic reticulum 36.13 50.15
CDY02431 Canola nucleus 47.06 49.89
KRH55800 Soybean endoplasmic reticulum, golgi 35.92 49.85
KRH55762 Soybean endoplasmic reticulum 35.71 49.56
KRH25766 Soybean extracellular 35.5 49.27
KRH55801 Soybean golgi, vacuole 35.29 48.98
KRH55761 Soybean extracellular 35.29 48.98
KRH55750 Soybean extracellular 35.29 48.98
KRH25728 Soybean extracellular 35.29 48.98
KRH03891 Soybean endoplasmic reticulum 38.45 48.28
KRH13244 Soybean extracellular 33.61 48.19
KRH55769 Soybean extracellular, vacuole 34.24 46.31
KRH61098 Soybean endoplasmic reticulum, extracellular, plasma membrane 42.44 46.01
KRH25038 Soybean extracellular 32.98 45.77
KRH50168 Soybean nucleus 31.3 43.82
Protein Annotations
EntrezGene:100805702Gene3D:3.10.20.500Gene3D:3.90.70.10MapMan:50.3.4EMBL:ACUP02010765MEROPS:C01.029
EnsemblPlantsGene:GLYMA_17G239000GO:GO:0003674GO:GO:0003824GO:GO:0004197GO:GO:0005575GO:GO:0005576
GO:GO:0005615GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005764GO:GO:0005773
GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0008234GO:GO:0009056
GO:GO:0009987GO:GO:0016787GO:GO:0019538GO:GO:0051603InterPro:GranulinInterPro:Granulin_sf
UniProt:I1MXL3InterPro:IPR037277EnsemblPlants:KRH05634ProteinID:KRH05634ProteinID:KRH05634.1PFAM:PF00112
PFAM:PF00396PFAM:PF08246PRINTS:PR00705ScanProsite:PS00139ScanProsite:PS00639ScanProsite:PS00640
PANTHER:PTHR12411PANTHER:PTHR12411:SF352InterPro:Papain_like_cys_pep_sfInterPro:Pept_asp_ASInterPro:Pept_cys_ASInterPro:Pept_his_AS
InterPro:Peptidase_C1AInterPro:Peptidase_C1A_CInterPro:Prot_inhib_I29SMART:SM00277SMART:SM00645SMART:SM00848
SUPFAM:SSF54001SUPFAM:SSF57277SignalP:SignalP-TMTMHMM:TMhelixUniParc:UPI000233E681SEG:seg
Description
hypothetical protein
Coordinates
chr17:-:39449686..39454670
Molecular Weight (calculated)
52118.1 Da
IEP (calculated)
5.529
GRAVY (calculated)
-0.417
Length
476 amino acids
Sequence
(BLAST)
001: MGSSSITTSP ATMTMAAIVL LFTVFAVSSA LDMSIISYDS AHADKAATLR TEEELMSMYE QWLVKHGKVY NALGEKEKRF QIFKDNLRFI DDHNSAEDRT
101: YKLGLNRFAD LTNEEYRAKY LGTKIDPNRR LGKTPSNRYA PRVGDKLPDS VDWRKEGAVP PVKDQGGCGS CWAFSAIGAV EGINKIVTGE LISLSEQELV
201: DCDTGYNQGC NGGLMDYAFE FIINNGGIDS DEDYPYRGVD GRCDTYRKNA KVVSIDDYED VPAYDELALK KAVANQPVSV AIEGGGREFQ LYVSGVFTGR
301: CGTALDHGVV AVGYGTAKGH DYWIVRNSWG SSWGEDGYIR LERNLANSRS GKCGIAIEPS YPLKNGPNPP NPGPSPPSPV KPPNVCDNYY SCADSATCCC
401: IFEFGNACFE WGCCPLEGAS CCDDHYSCCP ADYPICNTYA GTCLRSKNNP FGVKALRRTP AKPHWTFGRK NKVSSA
Best Arabidopsis Sequence Match ( AT1G47128.1 )
(BLAST)
001: MGFLKPTMAI LFLAMVAVSS AVDMSIISYD EKHGVSTTGG RSEAEVMSIY EAWLVKHGKA QSQNSLVEKD RRFEIFKDNL RFVDEHNEKN LSYRLGLTRF
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
Arabidopsis Description
RD21ARD21A [Source:UniProtKB/TrEMBL;Acc:A0A178WIH7]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.