CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX96575
CDY00400
CDY01314
CDY04673
CDY08176
CDY38821

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43060.1	CDX96575	AT1G21750.1	18676877
AT5G43060.1	CDY00400	AT1G21750.1	18676877
AT5G43060.1	CDY01314	AT1G21750.1	18676877
AT5G43060.1	CDY04673	AT1G21750.1	18676877
AT5G43060.1	CDY08176	AT1G21750.1	18676877
AT5G43060.1	CDY38821	AT1G21750.1	18676877

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25228	Canola	extracellular	63.47	61.96
CDY22370	Canola	extracellular	62.36	60.87
CDX71540	Canola	extracellular	62.14	60.65
AT5G43060.1	Thale cress	endoplasmic reticulum	58.8	57.02
CDY17093	Canola	endoplasmic reticulum	54.79	53.83
CDY06760	Canola	endoplasmic reticulum	54.79	53.83
CDY17044	Canola	endoplasmic reticulum	55.01	53.81
CDY63586	Canola	endoplasmic reticulum	54.79	53.59
CDY17193	Canola	endoplasmic reticulum	36.3	51.26
VIT_18s0001g09990.t01	Wine grape	endoplasmic reticulum	51.67	49.68
KXG27269	Sorghum	endoplasmic reticulum	50.11	48.49
Zm00001d002065_P006	Maize	plasma membrane	50.33	48.29
Zm00001d026458_P002	Maize	endoplasmic reticulum	50.56	47.29
KRH05634	Soybean	endoplasmic reticulum	49.89	47.06
PGSC0003DMT400020654	Potato	cytosol	46.1	46.73
GSMUA_Achr3P01000_001	Banana	endoplasmic reticulum	48.78	46.7
CDY46179	Canola	endoplasmic reticulum	46.77	46.67
GSMUA_Achr8P03350_001	Banana	endoplasmic reticulum, extracellular, vacuole	34.3	46.25
CDY27951	Canola	endoplasmic reticulum	47.22	46.19
TraesCS2B01G540100.2	Wheat	golgi	47.44	46.0
TraesCS2D01G513600.1	Wheat	endoplasmic reticulum, golgi, vacuole	47.44	46.0
TraesCS2A01G512100.1	Wheat	extracellular	47.22	45.99
CDX95457	Canola	endoplasmic reticulum, extracellular, vacuole	45.88	45.88
GSMUA_Achr4P06140_001	Banana	endoplasmic reticulum	47.88	45.84
GSMUA_Achr1P15920_001	Banana	endoplasmic reticulum	47.88	45.74
GSMUA_Achr10P...	Banana	endoplasmic reticulum	47.66	45.63
KRH15406	Soybean	nucleus	50.33	45.56
GSMUA_Achr4P12910_001	Banana	endoplasmic reticulum	47.88	45.45
CDY50157	Canola	endoplasmic reticulum, extracellular, vacuole	45.43	45.43
Solyc12g088670.1.1	Tomato	endoplasmic reticulum	46.77	45.06
CDY39574	Canola	cytosol, endoplasmic reticulum, nucleus	29.18	44.56
HORVU2Hr1G113460.2	Barley	plasma membrane	48.11	44.17
Solyc04g078540.2.1	Tomato	endoplasmic reticulum	45.88	43.64
KRH61341	Soybean	endoplasmic reticulum, extracellular, vacuole	35.19	43.05
GSMUA_Achr1P09800_001	Banana	endoplasmic reticulum	45.21	42.92
CDY50154	Canola	endoplasmic reticulum	40.53	41.36
CDY31861	Canola	endoplasmic reticulum	32.52	41.36
CDX99227	Canola	endoplasmic reticulum	46.55	41.22
CDX95451	Canola	endoplasmic reticulum, extracellular, vacuole	40.31	41.14
CDY01351	Canola	endoplasmic reticulum	32.07	41.03
CDX75633	Canola	vacuole	33.85	40.64
CDY22445	Canola	vacuole	33.85	40.64
CDX96617	Canola	endoplasmic reticulum	29.4	40.37
CDY33651	Canola	endoplasmic reticulum	29.18	40.18
CDX69285	Canola	endoplasmic reticulum, vacuole	33.18	39.84
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi	30.29	39.65
CDX94938	Canola	extracellular, vacuole	38.98	39.59
CDX93470	Canola	plasma membrane	38.98	39.5
CDY48168	Canola	endoplasmic reticulum	31.4	39.28
CDY34045	Canola	endoplasmic reticulum	31.18	38.78
CDY44047	Canola	vacuole	32.96	38.54
CDY63262	Canola	extracellular, plasma membrane, vacuole	21.16	38.31
CDX75496	Canola	endoplasmic reticulum	30.29	38.2
CDX83168	Canola	endoplasmic reticulum	30.51	37.95
CDY58055	Canola	golgi, nucleus, plastid	26.5	36.96
CDY37617	Canola	endoplasmic reticulum, extracellular	30.07	36.49
CDY16132	Canola	endoplasmic reticulum, extracellular, vacuole	30.73	36.41
CDY25281	Canola	extracellular	30.07	36.39
CDX69132	Canola	plastid	30.73	36.32
CDY39575	Canola	endoplasmic reticulum	28.95	35.33
CDX77621	Canola	endoplasmic reticulum, extracellular	26.95	35.28
CDY25283	Canola	vacuole	29.18	35.12
CDY31498	Canola	cytosol	23.16	34.78
CDY50483	Canola	endoplasmic reticulum	26.73	34.68
CDX87758	Canola	endoplasmic reticulum	26.73	34.68

Protein Annotations

Gene3D:3.10.20.500	Gene3D:3.90.70.10	MapMan:50.3.4	GO:A0A078EMP3	EnsemblPlants:CDY02431	ProteinID:CDY02431
ProteinID:CDY02431.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008234	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00114036001	InterPro:Granulin	InterPro:Granulin_sf
InterPro:IPR037277	PFAM:PF00112	PFAM:PF00396	ScanProsite:PS00639	PANTHER:PTHR12411	PANTHER:PTHR12411:SF523
InterPro:Papain_like_cys_pep_sf	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	SMART:SM00277	SMART:SM00645
SUPFAM:SSF54001	SUPFAM:SSF57277	UniParc:UPI0004EE85D6	SEG:seg	:	:

Description

BnaA02g23400D

Coordinates

chrLK031934:-:1076100..1079350

Molecular Weight (calculated)

50352.3 Da

IEP (calculated)

7.316

GRAVY (calculated)

-0.617

Length

449 amino acids

Sequence
(BLAST)

001: MEVVRQQQRR SIPSTLFSLS LNRDASSLSC DEVTPPLCNH PSPSDDDRRF IRCRHVDHLI RREAPHLRRQ WLERRRGFKN LRGVDGETRK EDDDDAEQRS
101: CHGSEIRDLQ RQSLFHRRTQ NKNLSYKLGL TRFADLTNDK YRSIYLGAKP KKRVLKTSDH YEPRGCDALP ASVDWRKEGV VAAVKDQGSC VVGHFQPIGG
201: VEGINKIVTR DLISLSEQEL IECDTSYNQD CNGVLIDYAF EFIIKNGGID TEEDCPYKTV DGRCDQNMGN AKVVTIDGYE DVPKNNEAAL KKALANQPIS
301: FAIKAGGHAL QLYSLGVFDG TCGTELDHGV VAVGYGTEDG KDYWINPPNP GPSPPSPIKP PTKCDKYYSF PEGNTCCCLF KYSKYCFGWG CCPLEAATCC
401: FDNTSCCPHE YPVCNGDTCL MSKNSPFSVK VFKCTPAKPF WAHSRNNMA

Best Arabidopsis Sequence Match ( AT1G09850.1 )
(BLAST)

001: MSMSSSSFIS LTFFFLLLVS SSSSSDDISE LFDDWCQKHG KTYGSEEERQ QRIQIFKDNH DFVTQHNLIT NATYSLSLNA FADLTHHEFK ASRLGLSVSA
101: PSVIMASKGQ SLGGSVKVPD SVDWRKKGAV TNVKDQGSCG ACWSFSATGA MEGINQIVTG DLISLSEQEL IDCDKSYNAG CNGGLMDYAF EFVIKNHGID
201: TEKDYPYQER DGTCKKDKLK QKVVTIDSYA GVKSNDEKAL MEAVAAQPVS VGICGSERAF QLYSSGIFSG PCSTSLDHAV LIVGYGSQNG VDYWIVKNSW
301: GKSWGMDGFM HMQRNTENSD GVCGINMLAS YPIKTHPNPP PPSPPGPTKC NLFTYCSSGE TCCCARELFG LCFSWKCCEI ESAVCCKDGR HCCPHDYPVC
401: DTTRSLCLKK TGNFTAIKPF WKKNSSKQLG RFEEWVM

Arabidopsis Description

XBCP3At1g09850 [Source:UniProtKB/TrEMBL;Acc:Q0WVJ5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.