Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22370 | Canola | extracellular | 93.91 | 93.91 |
| CDX71540 | Canola | extracellular | 93.48 | 93.48 |
| AT5G43060.1 | Thale cress | endoplasmic reticulum | 87.39 | 86.83 |
| CDY06760 | Canola | endoplasmic reticulum | 77.83 | 78.34 |
| CDY17093 | Canola | endoplasmic reticulum | 77.83 | 78.34 |
| CDY17044 | Canola | endoplasmic reticulum | 77.83 | 78.0 |
| CDY63586 | Canola | endoplasmic reticulum | 77.17 | 77.34 |
| CDY17193 | Canola | endoplasmic reticulum | 48.7 | 70.44 |
| VIT_18s0001g09990.t01 | Wine grape | endoplasmic reticulum | 70.43 | 69.38 |
| GSMUA_Achr3P01000_001 | Banana | endoplasmic reticulum | 67.61 | 66.31 |
| KXG27269 | Sorghum | endoplasmic reticulum | 66.09 | 65.52 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 66.52 | 65.25 |
| CDY27951 | Canola | endoplasmic reticulum | 65.0 | 65.14 |
| KRH05634 | Soybean | endoplasmic reticulum | 67.17 | 64.92 |
| GSMUA_Achr4P06140_001 | Banana | endoplasmic reticulum | 65.87 | 64.61 |
| PGSC0003DMT400020654 | Potato | cytosol | 62.17 | 64.56 |
| Zm00001d002065_P006 | Maize | plasma membrane | 65.65 | 64.53 |
| Zm00001d026458_P002 | Maize | endoplasmic reticulum | 67.17 | 64.38 |
| GSMUA_Achr4P12910_001 | Banana | endoplasmic reticulum | 66.09 | 64.27 |
| GSMUA_Achr1P15920_001 | Banana | endoplasmic reticulum | 65.0 | 63.62 |
| CDY02431 | Canola | nucleus | 61.96 | 63.47 |
| TraesCS2A01G512100.1 | Wheat | extracellular | 63.26 | 63.12 |
| TraesCS2D01G513600.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 63.48 | 63.07 |
| TraesCS2B01G540100.2 | Wheat | golgi | 63.48 | 63.07 |
| KRH15406 | Soybean | nucleus | 67.39 | 62.5 |
| Solyc12g088670.1.1 | Tomato | endoplasmic reticulum | 63.04 | 62.23 |
| Solyc04g078540.2.1 | Tomato | endoplasmic reticulum | 63.26 | 61.65 |
| KRH61341 | Soybean | endoplasmic reticulum, extracellular, vacuole | 49.13 | 61.58 |
| CDY46179 | Canola | endoplasmic reticulum | 60.0 | 61.33 |
| GSMUA_Achr8P03350_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 44.13 | 60.96 |
| HORVU2Hr1G113460.2 | Barley | plasma membrane | 64.57 | 60.74 |
| CDX95457 | Canola | endoplasmic reticulum, extracellular, vacuole | 58.48 | 59.91 |
| CDY50157 | Canola | endoplasmic reticulum, extracellular, vacuole | 58.48 | 59.91 |
| CDX75633 | Canola | vacuole | 48.48 | 59.63 |
| CDY22445 | Canola | vacuole | 48.26 | 59.36 |
| CDX69285 | Canola | endoplasmic reticulum, vacuole | 48.04 | 59.09 |
| GSMUA_Achr1P09800_001 | Banana | endoplasmic reticulum | 59.35 | 57.72 |
| CDY39574 | Canola | cytosol, endoplasmic reticulum, nucleus | 36.74 | 57.48 |
| CDY44047 | Canola | vacuole | 47.39 | 56.77 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, golgi | 40.87 | 54.81 |
| CDY63262 | Canola | extracellular, plasma membrane, vacuole | 29.35 | 54.44 |
| CDY50154 | Canola | endoplasmic reticulum | 51.74 | 54.09 |
| CDX99227 | Canola | endoplasmic reticulum | 59.35 | 53.85 |
| CDX95451 | Canola | endoplasmic reticulum, extracellular, vacuole | 51.3 | 53.64 |
| CDY31861 | Canola | endoplasmic reticulum | 40.65 | 52.97 |
| CDY37617 | Canola | endoplasmic reticulum, extracellular | 42.61 | 52.97 |
| CDY25281 | Canola | extracellular | 42.61 | 52.83 |
| CDY25283 | Canola | vacuole | 42.61 | 52.55 |
| CDY01351 | Canola | endoplasmic reticulum | 40.0 | 52.42 |
| CDX75496 | Canola | endoplasmic reticulum | 40.43 | 52.25 |
| CDY16132 | Canola | endoplasmic reticulum, extracellular, vacuole | 42.83 | 51.98 |
| CDY34045 | Canola | endoplasmic reticulum | 40.43 | 51.52 |
| CDX83168 | Canola | endoplasmic reticulum | 39.78 | 50.69 |
| CDY48168 | Canola | endoplasmic reticulum | 39.35 | 50.42 |
| CDX96617 | Canola | endoplasmic reticulum | 35.65 | 50.15 |
| CDY33651 | Canola | endoplasmic reticulum | 35.43 | 50.0 |
| CDY58055 | Canola | golgi, nucleus, plastid | 34.57 | 49.38 |
| CDX69132 | Canola | plastid | 40.65 | 49.21 |
| CDX93470 | Canola | plasma membrane | 45.87 | 47.63 |
| CDX94938 | Canola | extracellular, vacuole | 45.43 | 47.29 |
| CDX87758 | Canola | endoplasmic reticulum | 35.43 | 47.11 |
| CDY50483 | Canola | endoplasmic reticulum | 35.43 | 47.11 |
| CDY39575 | Canola | endoplasmic reticulum | 37.17 | 46.47 |
| CDX77621 | Canola | endoplasmic reticulum, extracellular | 34.57 | 46.36 |
| CDY31498 | Canola | cytosol | 27.39 | 42.14 |
Protein Annotations
| Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | GO:A0A078GKV6 | UniProt:A0A078GKV6 | MEROPS:C01.A12 |
| EnsemblPlants:CDY25228 | ProteinID:CDY25228 | ProteinID:CDY25228.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00029209001 | InterPro:Granulin | InterPro:Granulin_sf | InterPro:IPR037277 | PFAM:PF00112 | PFAM:PF00396 |
| PFAM:PF08246 | PRINTS:PR00705 | ScanProsite:PS00139 | ScanProsite:PS00639 | ScanProsite:PS00640 | PANTHER:PTHR12411 |
| PANTHER:PTHR12411:SF523 | InterPro:Papain_like_cys_pep_sf | InterPro:Pept_asp_AS | InterPro:Pept_cys_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A |
| InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 | SMART:SM00277 | SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 |
| SUPFAM:SSF57277 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EAFE2F | SEG:seg | : |
Description
BnaC02g30040DBnaC02g30040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKV6]
Coordinates
chrLK032171:-:96366..98731
Molecular Weight (calculated)
50697.0 Da
IEP (calculated)
6.492
GRAVY (calculated)
-0.468
Length
460 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFVNVTILL LAMMIGVSYA VDMSIISYDE KRHISAVNGR SDAEVSKIYE EWMEKHGKKK MMTQNNGLVT DQRFEIFKDN LRFIDEHNNK NLSYKLGLTR
101: FADLTNDEYR SIYLGAKPKK RVLKTSDRYE PRVGDALPAS VDWRKEGAVA AVKDQGSCGS CWAFSTIGAV EGINKIVTGD LISLSEQELV DCDTSYNQGC
201: NGGLMDYAFE FIIKNGGIDT EEDYPYKAAD GRCDQNRKNA KVVKIDGYED VPENNEAALK KALANQPISV AIEAGGRAFQ LYSSGVFDGT CGTELDHGVV
301: AVGYGTEDGK DYWIVRNSWG GSWGESGYIK MARNIAEPTG KCGITMEASY PIKKGQNPPN PGPSPPSPIK PPTKCDKYYS CPEGNTCCCL FKYGKYCFGW
401: GCCPLEAATC CDDNTSCCPH EYPVCNGDTC LMSKNSPFSV KALKRTPAKP FWAHSRKNMA
101: FADLTNDEYR SIYLGAKPKK RVLKTSDRYE PRVGDALPAS VDWRKEGAVA AVKDQGSCGS CWAFSTIGAV EGINKIVTGD LISLSEQELV DCDTSYNQGC
201: NGGLMDYAFE FIIKNGGIDT EEDYPYKAAD GRCDQNRKNA KVVKIDGYED VPENNEAALK KALANQPISV AIEAGGRAFQ LYSSGVFDGT CGTELDHGVV
301: AVGYGTEDGK DYWIVRNSWG GSWGESGYIK MARNIAEPTG KCGITMEASY PIKKGQNPPN PGPSPPSPIK PPTKCDKYYS CPEGNTCCCL FKYGKYCFGW
401: GCCPLEAATC CDDNTSCCPH EYPVCNGDTC LMSKNSPFSV KALKRTPAKP FWAHSRKNMA
001: MGFLKLSPMI LLLAMIGVSY AMDMSIISYD ENHHITTETS RSDSEVERIY EAWMVEHGKK KMNQNGLGAE KDQRFEIFKD NLRFIDEHNT KNLSYKLGLT
101: RFADLTNEEY RSMYLGAKPT KRVLKTSDRY QARVGDALPD SVDWRKEGAV ADVKDQGSCG SCWAFSTIGA VEGINKIVTG DLISLSEQEL VDCDTSYNQG
201: CNGGLMDYAF EFIIKNGGID TEADYPYKAA DGRCDQNRKN AKVVTIDSYE DVPENSEASL KKALAHQPIS VAIEAGGRAF QLYSSGVFDG LCGTELDHGV
301: VAVGYGTENG KDYWIVRNSW GNRWGESGYI KMARNIEAPT GKCGIAMEAS YPIKKGQNPP NPGPSPPSPI KPPTTCDKYF SCPESNTCCC LYKYGKYCFG
401: WGCCPLEAAT CCDDNSSCCP HEYPVCDVNR GTCLMSKNSP FSVKALKRTP AIPFWAKSRK HIA
101: RFADLTNEEY RSMYLGAKPT KRVLKTSDRY QARVGDALPD SVDWRKEGAV ADVKDQGSCG SCWAFSTIGA VEGINKIVTG DLISLSEQEL VDCDTSYNQG
201: CNGGLMDYAF EFIIKNGGID TEADYPYKAA DGRCDQNRKN AKVVTIDSYE DVPENSEASL KKALAHQPIS VAIEAGGRAF QLYSSGVFDG LCGTELDHGV
301: VAVGYGTENG KDYWIVRNSW GNRWGESGYI KMARNIEAPT GKCGIAMEAS YPIKKGQNPP NPGPSPPSPI KPPTTCDKYF SCPESNTCCC LYKYGKYCFG
401: WGCCPLEAAT CCDDNSSCCP HEYPVCDVNR GTCLMSKNSP FSVKALKRTP AIPFWAKSRK HIA
Arabidopsis Description
RD21BProbable cysteine protease RD21B [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH8]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.