Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 7
- vacuole 7
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P16970_001 | |
| GSMUA_Achr3P22070_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P06140_001 | Banana | endoplasmic reticulum | 68.29 | 68.87 |
| GSMUA_Achr4P12910_001 | Banana | endoplasmic reticulum | 68.29 | 68.29 |
| GSMUA_Achr1P15920_001 | Banana | endoplasmic reticulum | 66.81 | 67.23 |
| GSMUA_Achr3P01000_001 | Banana | endoplasmic reticulum | 65.12 | 65.67 |
| VIT_18s0001g09990.t01 | Wine grape | endoplasmic reticulum | 63.0 | 63.81 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 63.21 | 63.75 |
| KXG27269 | Sorghum | endoplasmic reticulum | 61.31 | 62.5 |
| Zm00001d002065_P006 | Maize | plasma membrane | 61.73 | 62.39 |
| TraesCS2A01G512100.1 | Wheat | extracellular | 60.68 | 62.26 |
| TraesCS2B01G540100.2 | Wheat | golgi | 60.89 | 62.2 |
| TraesCS2D01G513600.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 60.89 | 62.2 |
| Zm00001d026458_P002 | Maize | endoplasmic reticulum | 62.58 | 61.67 |
| GSMUA_Achr8P03350_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 43.13 | 61.26 |
| KRH05634 | Soybean | endoplasmic reticulum | 60.47 | 60.08 |
| Bra033657.1-P | Field mustard | extracellular | 57.93 | 59.57 |
| CDY63586 | Canola | endoplasmic reticulum | 57.72 | 59.48 |
| CDY25228 | Canola | extracellular | 57.72 | 59.35 |
| CDY22370 | Canola | extracellular | 57.72 | 59.35 |
| CDY17093 | Canola | endoplasmic reticulum | 57.29 | 59.3 |
| CDX71540 | Canola | extracellular | 57.51 | 59.13 |
| Bra040749.1-P | Field mustard | endoplasmic reticulum | 57.08 | 59.08 |
| CDY17044 | Canola | endoplasmic reticulum | 57.29 | 59.04 |
| AT1G47128.1 | Thale cress | endoplasmic reticulum | 57.51 | 58.87 |
| CDY06760 | Canola | endoplasmic reticulum | 56.87 | 58.86 |
| AT5G43060.1 | Thale cress | endoplasmic reticulum | 57.51 | 58.75 |
| Bra014057.1-P | Field mustard | endoplasmic reticulum | 56.87 | 58.61 |
| HORVU2Hr1G113460.2 | Barley | plasma membrane | 60.25 | 58.28 |
| KRH15406 | Soybean | nucleus | 60.25 | 57.46 |
| PGSC0003DMT400020654 | Potato | cytosol | 53.07 | 56.66 |
| CDY17193 | Canola | endoplasmic reticulum | 38.05 | 56.6 |
| KRH61341 | Soybean | endoplasmic reticulum, extracellular, vacuole | 43.76 | 56.4 |
| Solyc12g088670.1.1 | Tomato | endoplasmic reticulum | 55.18 | 56.01 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, golgi | 39.96 | 55.1 |
| Solyc04g078540.2.1 | Tomato | endoplasmic reticulum | 54.33 | 54.45 |
| GSMUA_Achr2P04950_001 | Banana | endoplasmic reticulum, golgi | 37.42 | 50.72 |
| GSMUA_Achr3P03740_001 | Banana | endoplasmic reticulum | 37.84 | 50.71 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 37.63 | 49.58 |
| CDY27951 | Canola | endoplasmic reticulum | 47.57 | 49.02 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 36.79 | 48.88 |
| GSMUA_Achr6P13620_001 | Banana | extracellular, vacuole | 32.56 | 46.39 |
| CDY02431 | Canola | nucleus | 42.92 | 45.21 |
| GSMUA_Achr4P17710_001 | Banana | endoplasmic reticulum, extracellular | 41.65 | 44.77 |
| GSMUA_Achr3P11680_001 | Banana | endoplasmic reticulum, vacuole | 37.0 | 44.76 |
Protein Annotations
| Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr1G09800_001 |
| EnsemblPlants:GSMUA_Achr1P09800_001 | EnsemblPlants:GSMUA_Achr1T09800_001 | InterPro:Granulin | InterPro:Granulin_sf | InterPro:IPR037277 | UniProt:M0RYI9 |
| PFAM:PF00112 | PFAM:PF00396 | PFAM:PF08246 | PRINTS:PR00705 | ScanProsite:PS00640 | PANTHER:PTHR12411 |
| PANTHER:PTHR12411:SF352 | InterPro:Papain_like_cys_pep_sf | InterPro:Pept_asp_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 |
| SMART:SM00277 | SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 | SUPFAM:SSF57277 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI000296EDB9 | SEG:seg | : | : | : |
Description
Oryzain alpha chain [Source:GMGC_GENE;Acc:GSMUA_Achr1G09800_001]
Coordinates
chr1:+:7465522..7468918
Molecular Weight (calculated)
51655.3 Da
IEP (calculated)
5.948
GRAVY (calculated)
-0.360
Length
473 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVISKPFVA VVVLLLLGLA ASAAAAALDT SIVSYEARRR VGGLRRSEED VRRLYEEWMV KHRRSYDAVG EKEKRFEVFK DNLRFVDAHN AAAEAGGRGF
101: HLGLNRFADL TNEEYRAAYL ATRPPATAGR NRVASHRYVH HAGDELPASV DWRAEGAVAA VKDQGRCASG WAFATIAAVE GINKIVTGDL IRLSEQELVD
201: CDTAYNLGCN GGIVDYAFAF IISNGGIDTE DDYPYKGHED KCNWLRKNAK AVSIDGFEDV PTNDEKALLK AVANQPVSVA IEAGSREFQL YRSGVFTGRC
301: GTDLDHGAVI VGYGTDHGKD YWIVRNSWGE DWGEAGYIRM ERSVNTSAGK CGIAMIPSYP TKKDPKHGPC HPSSVNPPTS CDSQYACLSG TTCCCVYENG
401: RYCYAWGCCP SEAATCCEDH YSCCPQDYPF CNVQAGTCQM SKDNPLGVKA LASSPATPYW WNSGIDARKS SNE
101: HLGLNRFADL TNEEYRAAYL ATRPPATAGR NRVASHRYVH HAGDELPASV DWRAEGAVAA VKDQGRCASG WAFATIAAVE GINKIVTGDL IRLSEQELVD
201: CDTAYNLGCN GGIVDYAFAF IISNGGIDTE DDYPYKGHED KCNWLRKNAK AVSIDGFEDV PTNDEKALLK AVANQPVSVA IEAGSREFQL YRSGVFTGRC
301: GTDLDHGAVI VGYGTDHGKD YWIVRNSWGE DWGEAGYIRM ERSVNTSAGK CGIAMIPSYP TKKDPKHGPC HPSSVNPPTS CDSQYACLSG TTCCCVYENG
401: RYCYAWGCCP SEAATCCEDH YSCCPQDYPF CNVQAGTCQM SKDNPLGVKA LASSPATPYW WNSGIDARKS SNE
001: MATSIKSITL ALLIFSVLLI SLSLGSVTAT ETTRNEAEAR RMYERWLVEN RKNYNGLGEK ERRFEIFKDN LKFVEEHSSI PNRTYEVGLT RFADLTNDEF
101: RAIYLRSKME RTRVPVKGEK YLYKVGDSLP DAIDWRAKGA VNPVKDQGSC GSCWAFSAIG AVEGINQIKT GELISLSEQE LVDCDTSYND GCGGGLMDYA
201: FKFIIENGGI DTEEDYPYIA TDVNVCNSDK KNTRVVTIDG YEDVPQNDEK SLKKALANQP ISVAIEAGGR AFQLYTSGVF TGTCGTSLDH GVVAVGYGSE
301: GGQDYWIVRN SWGSNWGESG YFKLERNIKE SSGKCGVAMM ASYPTKSSGS NPPKPPAPSP VVCDKSNTCP AKSTCCCLYE YNGKCYSWGC CPYESATCCD
401: DGSSCCPQSY PVCDLKANTC RMKGNSPLSI KALTRGPAIA TTKSTNMLVG SA
101: RAIYLRSKME RTRVPVKGEK YLYKVGDSLP DAIDWRAKGA VNPVKDQGSC GSCWAFSAIG AVEGINQIKT GELISLSEQE LVDCDTSYND GCGGGLMDYA
201: FKFIIENGGI DTEEDYPYIA TDVNVCNSDK KNTRVVTIDG YEDVPQNDEK SLKKALANQP ISVAIEAGGR AFQLYTSGVF TGTCGTSLDH GVVAVGYGSE
301: GGQDYWIVRN SWGSNWGESG YFKLERNIKE SSGKCGVAMM ASYPTKSSGS NPPKPPAPSP VVCDKSNTCP AKSTCCCLYE YNGKCYSWGC CPYESATCCD
401: DGSSCCPQSY PVCDLKANTC RMKGNSPLSI KALTRGPAIA TTKSTNMLVG SA
Arabidopsis Description
RD21CProbable cysteine protease RD21C [Source:UniProtKB/Swiss-Prot;Acc:Q9LT78]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.