Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 7
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra012293.1-P | |
| Bra016405.1-P | |
| Bra017948.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G47128.1 | Bra012293.1-P | AT1G21750.1 | 18676877 |
| AT1G47128.1 | Bra016405.1-P | AT1G21750.1 | 18676877 |
| AT1G47128.1 | Bra017948.1-P | AT1G21750.1 | 18676877 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17044 | Canola | endoplasmic reticulum | 98.69 | 98.69 |
| Bra040749.1-P | Field mustard | endoplasmic reticulum | 89.98 | 90.37 |
| AT1G47128.1 | Thale cress | endoplasmic reticulum | 81.26 | 80.74 |
| Bra033657.1-P | Field mustard | extracellular | 77.12 | 76.96 |
| VIT_18s0001g09990.t01 | Wine grape | endoplasmic reticulum | 70.15 | 68.95 |
| KXG27269 | Sorghum | endoplasmic reticulum | 68.41 | 67.67 |
| Zm00001d002065_P006 | Maize | plasma membrane | 68.19 | 66.88 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 67.97 | 66.52 |
| KRH05634 | Soybean | endoplasmic reticulum | 68.85 | 66.39 |
| Zm00001d026458_P002 | Maize | endoplasmic reticulum | 68.85 | 65.83 |
| TraesCS2A01G512100.1 | Wheat | extracellular | 65.58 | 65.29 |
| TraesCS2B01G540100.2 | Wheat | golgi | 65.8 | 65.23 |
| TraesCS2D01G513600.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 65.8 | 65.23 |
| KRH15406 | Soybean | nucleus | 69.93 | 64.72 |
| GSMUA_Achr3P01000_001 | Banana | endoplasmic reticulum | 65.8 | 64.39 |
| GSMUA_Achr4P06140_001 | Banana | endoplasmic reticulum | 64.05 | 62.69 |
| KRH61341 | Soybean | endoplasmic reticulum, extracellular, vacuole | 50.11 | 62.67 |
| PGSC0003DMT400020654 | Potato | cytosol | 60.35 | 62.53 |
| HORVU2Hr1G113460.2 | Barley | plasma membrane | 66.23 | 62.17 |
| GSMUA_Achr1P15920_001 | Banana | endoplasmic reticulum | 63.62 | 62.13 |
| Solyc12g088670.1.1 | Tomato | endoplasmic reticulum | 62.96 | 62.02 |
| GSMUA_Achr4P12910_001 | Banana | endoplasmic reticulum | 63.62 | 61.73 |
| GSMUA_Achr8P03350_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 44.01 | 60.66 |
| Solyc04g078540.2.1 | Tomato | endoplasmic reticulum | 61.44 | 59.75 |
| Bra022418.1-P | Field mustard | endoplasmic reticulum | 58.39 | 59.56 |
| Bra013705.1-P | Field mustard | extracellular | 41.61 | 58.23 |
| Bra011746.1-P | Field mustard | vacuole | 46.41 | 56.95 |
| GSMUA_Achr1P09800_001 | Banana | endoplasmic reticulum | 58.61 | 56.87 |
| Bra010592.1-P | Field mustard | extracellular, golgi, vacuole | 45.97 | 56.42 |
| Bra038206.1-P | Field mustard | extracellular, plasma membrane, vacuole | 54.25 | 55.33 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, golgi | 40.96 | 54.81 |
| Bra038208.1-P | Field mustard | endoplasmic reticulum | 51.85 | 53.97 |
| Bra012252.1-P | Field mustard | endoplasmic reticulum | 39.65 | 51.7 |
| Bra011608.1-P | Field mustard | endoplasmic reticulum | 40.09 | 51.69 |
| Bra033148.1-P | Field mustard | extracellular | 41.61 | 51.48 |
| Bra033146.1-P | Field mustard | vacuole | 41.61 | 51.21 |
| Bra024736.1-P | Field mustard | endoplasmic reticulum, extracellular | 41.18 | 50.81 |
| Bra016447.1-P | Field mustard | endoplasmic reticulum, golgi, vacuole | 39.22 | 50.28 |
| Bra018067.1-P | Field mustard | endoplasmic reticulum | 38.56 | 49.3 |
| Bra000615.1-P | Field mustard | endoplasmic reticulum | 38.34 | 48.75 |
| Bra019982.1-P | Field mustard | extracellular, golgi | 46.62 | 48.31 |
| Bra025046.1-P | Field mustard | endoplasmic reticulum, extracellular | 35.29 | 47.09 |
| Bra021998.1-P | Field mustard | endoplasmic reticulum | 35.29 | 46.82 |
| Bra018066.1-P | Field mustard | endoplasmic reticulum | 36.6 | 45.65 |
Protein Annotations
| Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | EnsemblPlantsGene:Bra014057 | EnsemblPlants:Bra014057.1 | EnsemblPlants:Bra014057.1-P |
| MEROPS:C01.064 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | InterPro:Granulin | InterPro:Granulin_sf |
| InterPro:IPR037277 | UniProt:M4DC45 | PFAM:PF00112 | PFAM:PF00396 | PFAM:PF08246 | PRINTS:PR00705 |
| ScanProsite:PS00139 | ScanProsite:PS00639 | ScanProsite:PS00640 | PANTHER:PTHR12411 | PANTHER:PTHR12411:SF352 | InterPro:Papain_like_cys_pep_sf |
| InterPro:Pept_asp_AS | InterPro:Pept_cys_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 |
| SMART:SM00277 | SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 | SUPFAM:SSF57277 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI0002546AF7 | SEG:seg | : | : | : |
Description
AT1G47128 (E=4e-217) RD21, RD21A | RD21 (responsive to dehydration 21); cysteine-type endopeptidase/ cysteine-type peptidase
Coordinates
chrA08:+:3957153..3959230
Molecular Weight (calculated)
50670.5 Da
IEP (calculated)
5.226
GRAVY (calculated)
-0.414
Length
459 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLVNHAVLI LFLTLIAVSS AMDMSIISYD KNHRTVSAGS RSDAEVSKLY DEWLVKHGKV QNSLTERDRR FEIFKDNLRF IDDHNGKNLS YRLGLTKFAD
101: LTNDEYRSMY VGSRLKRKST RTSLRYGSRV GDALPESVDW RKEGAVAEVK DQGSCGSCWA FSAIGAVEGI NKIVTRDLIS LSEQELVDCD TSYNEGCNGG
201: LMDYAFEFII NNGGIDTEED YPYKSVDGRC DQTRKNAKVV TIDSYEDVPA NSEESLKKAL SNQPISVAIE GGGRAFQLYD SGIFDGICGT DLDHGVLAVG
301: YGTESGKDYW IVKNSWGSSW GESGYIRMER NIAASAGKCG IAVEPSYPIK NGQNPPNPGP SPPSPIKPPT QCDSYYTCPE SNTCCCLFEF GKYCLSWGCC
401: PLEAATCCDD NYSCCPHDYP VCDLDQGTCL MSKNSPFSVM ALKRKPAMPF WSHGRKTIA
101: LTNDEYRSMY VGSRLKRKST RTSLRYGSRV GDALPESVDW RKEGAVAEVK DQGSCGSCWA FSAIGAVEGI NKIVTRDLIS LSEQELVDCD TSYNEGCNGG
201: LMDYAFEFII NNGGIDTEED YPYKSVDGRC DQTRKNAKVV TIDSYEDVPA NSEESLKKAL SNQPISVAIE GGGRAFQLYD SGIFDGICGT DLDHGVLAVG
301: YGTESGKDYW IVKNSWGSSW GESGYIRMER NIAASAGKCG IAVEPSYPIK NGQNPPNPGP SPPSPIKPPT QCDSYYTCPE SNTCCCLFEF GKYCLSWGCC
401: PLEAATCCDD NYSCCPHDYP VCDLDQGTCL MSKNSPFSVM ALKRKPAMPF WSHGRKTIA
001: MGFLKPTMAI LFLAMVAVSS AVDMSIISYD EKHGVSTTGG RSEAEVMSIY EAWLVKHGKA QSQNSLVEKD RRFEIFKDNL RFVDEHNEKN LSYRLGLTRF
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
Arabidopsis Description
RD21ARD21A [Source:UniProtKB/TrEMBL;Acc:A0A178WIH7]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.