Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- endoplasmic reticulum 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G076360.1 | |
| HORVU4Hr1G043910.1 | |
| HORVU4Hr1G049820.1 | |
| HORVU4Hr1G049880.2 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G513600.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 91.21 | 96.33 |
| TraesCS2B01G540100.2 | Wheat | golgi | 91.21 | 96.33 |
| TraesCS2A01G512100.1 | Wheat | extracellular | 90.39 | 95.88 |
| KXG27269 | Sorghum | endoplasmic reticulum | 79.75 | 84.05 |
| Zm00001d002065_P006 | Maize | plasma membrane | 78.12 | 81.62 |
| Zm00001d026458_P002 | Maize | endoplasmic reticulum | 78.12 | 79.58 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 68.51 | 71.43 |
| GSMUA_Achr3P01000_001 | Banana | endoplasmic reticulum | 66.05 | 68.87 |
| GSMUA_Achr4P06140_001 | Banana | endoplasmic reticulum | 65.85 | 68.66 |
| VIT_18s0001g09990.t01 | Wine grape | endoplasmic reticulum | 65.24 | 68.31 |
| GSMUA_Achr8P03350_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 46.42 | 68.17 |
| GSMUA_Achr1P15920_001 | Banana | endoplasmic reticulum | 65.44 | 68.09 |
| AT1G47128.1 | Thale cress | endoplasmic reticulum | 64.01 | 67.75 |
| CDY63586 | Canola | endoplasmic reticulum | 62.78 | 66.88 |
| CDY17044 | Canola | endoplasmic reticulum | 62.58 | 66.67 |
| GSMUA_Achr4P12910_001 | Banana | endoplasmic reticulum | 64.42 | 66.6 |
| CDY17093 | Canola | endoplasmic reticulum | 62.17 | 66.52 |
| Bra040749.1-P | Field mustard | endoplasmic reticulum | 62.17 | 66.52 |
| CDY06760 | Canola | endoplasmic reticulum | 61.96 | 66.3 |
| Bra014057.1-P | Field mustard | endoplasmic reticulum | 62.17 | 66.23 |
| AT5G43060.1 | Thale cress | endoplasmic reticulum | 62.58 | 66.09 |
| CDX71540 | Canola | extracellular | 61.76 | 65.65 |
| Bra033657.1-P | Field mustard | extracellular | 61.55 | 65.43 |
| CDY22370 | Canola | extracellular | 61.55 | 65.43 |
| CDY25228 | Canola | extracellular | 60.74 | 64.57 |
| KRH05634 | Soybean | endoplasmic reticulum | 62.78 | 64.5 |
| Solyc12g088670.1.1 | Tomato | endoplasmic reticulum | 60.12 | 63.09 |
| CDY17193 | Canola | endoplasmic reticulum | 40.9 | 62.89 |
| PGSC0003DMT400020654 | Potato | cytosol | 56.65 | 62.53 |
| KRH15406 | Soybean | nucleus | 62.99 | 62.1 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, golgi | 42.74 | 60.93 |
| Solyc04g078540.2.1 | Tomato | endoplasmic reticulum | 58.69 | 60.81 |
| GSMUA_Achr1P09800_001 | Banana | endoplasmic reticulum | 58.28 | 60.25 |
| KRH61341 | Soybean | endoplasmic reticulum, extracellular, vacuole | 43.76 | 58.31 |
| HORVU7Hr1G055310.1 | Barley | extracellular | 53.78 | 56.32 |
| CDY27951 | Canola | endoplasmic reticulum | 52.56 | 55.99 |
| HORVU2Hr1G121440.2 | Barley | endoplasmic reticulum | 55.42 | 54.2 |
| HORVU2Hr1G121150.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 52.97 | 53.29 |
| HORVU2Hr1G009150.1 | Barley | extracellular, vacuole | 34.76 | 49.85 |
| HORVU2Hr1G009640.1 | Barley | extracellular | 34.15 | 49.12 |
| HORVU1Hr1G060040.1 | Barley | endoplasmic reticulum, extracellular | 34.15 | 48.97 |
| HORVU2Hr1G009610.1 | Barley | extracellular | 33.74 | 48.53 |
| HORVU4Hr1G006270.1 | Barley | extracellular, vacuole | 33.74 | 48.25 |
| HORVU7Hr1G044230.3 | Barley | extracellular | 33.54 | 48.24 |
| CDY02431 | Canola | nucleus | 44.17 | 48.11 |
| HORVU3Hr1G088270.2 | Barley | extracellular | 36.2 | 47.97 |
| HORVU4Hr1G006310.1 | Barley | endoplasmic reticulum, extracellular | 33.74 | 47.83 |
| HORVU2Hr1G009510.1 | Barley | cytosol | 33.54 | 47.81 |
| HORVU6Hr1G084520.5 | Barley | extracellular | 33.13 | 47.79 |
| HORVU3Hr1G091920.2 | Barley | endoplasmic reticulum | 36.4 | 47.72 |
| HORVU3Hr1G091790.1 | Barley | extracellular | 36.4 | 47.72 |
| HORVU6Hr1G083420.1 | Barley | extracellular | 33.13 | 47.51 |
| HORVU4Hr1G006280.2 | Barley | extracellular | 32.92 | 46.94 |
| HORVU3Hr1G088080.2 | Barley | endoplasmic reticulum, extracellular | 35.79 | 46.79 |
| HORVU3Hr1G091800.1 | Barley | endoplasmic reticulum | 35.99 | 46.44 |
| HORVU6Hr1G070320.2 | Barley | endoplasmic reticulum, extracellular | 33.95 | 45.6 |
| HORVU5Hr1G095580.1 | Barley | endoplasmic reticulum, extracellular | 32.11 | 44.99 |
| HORVU1Hr1G003940.6 | Barley | endoplasmic reticulum | 31.29 | 41.46 |
| HORVU2Hr1G023980.2 | Barley | vacuole | 28.83 | 41.23 |
| HORVU1Hr1G075530.3 | Barley | plastid | 39.67 | 38.26 |
Protein Annotations
| Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | UniProt:A0A287JHN8 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0008234 | GO:GO:0016787 |
| GO:GO:0019538 | InterPro:Granulin | InterPro:Granulin_sf | EnsemblPlantsGene:HORVU2Hr1G113460 | EnsemblPlants:HORVU2Hr1G113460.2 | InterPro:IPR037277 |
| PFAM:PF00112 | PFAM:PF00396 | PFAM:PF08246 | PRINTS:PR00705 | ScanProsite:PS00139 | ScanProsite:PS00639 |
| ScanProsite:PS00640 | PANTHER:PTHR12411 | PANTHER:PTHR12411:SF352 | InterPro:Papain_like_cys_pep_sf | InterPro:Pept_asp_AS | InterPro:Pept_cys_AS |
| InterPro:Pept_his_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 | SMART:SM00277 | SMART:SM00645 |
| SMART:SM00848 | SUPFAM:SSF54001 | SUPFAM:SSF57277 | TMHMM:TMhelix | UniParc:UPI000B46B6FA | SEG:seg |
Description
No Description!
Coordinates
chrchr2H:-:728830269..728834091
Molecular Weight (calculated)
52753.6 Da
IEP (calculated)
4.791
GRAVY (calculated)
-0.400
Length
489 amino acids
Sequence
(BLAST)
(BLAST)
001: KSTAATQSIP SATPLFLLGD APLVSGMRTS MALLAASAAL LLMVSLAAAA DMSIVSYGER SEEEVRRMYA EWMAEHGSTY NAIGEEERRF EAFRDNLRYI
101: DQHNAAADAG VHSFRLGLNR FADLTNEEYR STYLGARTKP DRERKLSARY QAADNDELPE SVDWRKKGAV GAVKDQGGCG SCWAFSAIAA VEGINQIVTG
201: DMIPLSEQEL VDCDTSYNQG CNGGLMDYAF EFIINNGGID SEEDYPYKER DNRCDANKKN AKVVTIDGYE DVPVNSEKSL QKAVANQPIS VAIEAGGRAF
301: QLYKSGIFTG TCGTALDHGV AAVGYGTENG KDYWLVRNSW GSVWGEDGYI RMERNIKASS GKCGIAVEPS YPTKTGENPP NPGPTPPSPA PPSSVCDSYN
401: ECPASTTCCC IYEYGKECFA WGCCPLEGAT CCDDHYSCCP HNYPICNTKQ GTCLAAKDSP LSVKAQRRTL AKPIGAFSGI AIDGKKSSA
101: DQHNAAADAG VHSFRLGLNR FADLTNEEYR STYLGARTKP DRERKLSARY QAADNDELPE SVDWRKKGAV GAVKDQGGCG SCWAFSAIAA VEGINQIVTG
201: DMIPLSEQEL VDCDTSYNQG CNGGLMDYAF EFIINNGGID SEEDYPYKER DNRCDANKKN AKVVTIDGYE DVPVNSEKSL QKAVANQPIS VAIEAGGRAF
301: QLYKSGIFTG TCGTALDHGV AAVGYGTENG KDYWLVRNSW GSVWGEDGYI RMERNIKASS GKCGIAVEPS YPTKTGENPP NPGPTPPSPA PPSSVCDSYN
401: ECPASTTCCC IYEYGKECFA WGCCPLEGAT CCDDHYSCCP HNYPICNTKQ GTCLAAKDSP LSVKAQRRTL AKPIGAFSGI AIDGKKSSA
001: MGFLKPTMAI LFLAMVAVSS AVDMSIISYD EKHGVSTTGG RSEAEVMSIY EAWLVKHGKA QSQNSLVEKD RRFEIFKDNL RFVDEHNEKN LSYRLGLTRF
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
Arabidopsis Description
RD21ARD21A [Source:UniProtKB/TrEMBL;Acc:A0A178WIH7]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.