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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid

Predictor Summary:
  • plastid 2
  • mitochondrion 3
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plastid
Any Predictor:mitochondrion, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
TargetP:plastid
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G075560.1
HORVU2Hr1G113460.2
HORVU2Hr1G121150.1
HORVU2Hr1G121440.2
HORVU7Hr1G055310.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G21750.1 HORVU2Hr1G113460.2 AT1G47128.1 18676877
AT1G21750.1 HORVU2Hr1G121150.1 AT3G19390.1 18676877
AT1G21750.1 HORVU2Hr1G121440.2 AT3G19390.1 18676877
AT1G21750.1 HORVU7Hr1G055310.1 AT3G19390.1 18676877
AT1G21750.1 HORVU2Hr1G121150.1 AT3G19400.1 18676877
AT1G21750.1 HORVU2Hr1G121440.2 AT3G19400.1 18676877
AT1G21750.1 HORVU7Hr1G055310.1 AT3G19400.1 18676877
AT1G21750.1 HORVU1Hr1G075560.1 AT5G42980.1 15352244
AT1G21750.1 HORVU2Hr1G113460.2 AT5G43060.1 18676877
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU4Hr1G049820.1 Barley cytosol 62.12 100.0
Zm00001d028108_P001 Maize mitochondrion 25.26 52.86
Zm00001d016017_P002 Maize cytosol 33.11 38.04
Zm00001d035557_P001 Maize mitochondrion 42.66 36.44
HORVU4Hr1G043910.1 Barley extracellular 66.55 34.82
Zm00001d041417_P001 Maize endoplasmic reticulum 25.6 33.94
Solyc06g060290.2.1 Tomato plastid 43.0 28.77
GSMUA_Achr1P16970_001 Banana endoplasmic reticulum 48.12 27.81
PGSC0003DMT400045299 Potato endoplasmic reticulum 42.32 24.95
GSMUA_Achr3P22070_001 Banana endoplasmic reticulum 43.69 24.9
Bra016405.1-P Field mustard endoplasmic reticulum 42.32 24.75
Bra012293.1-P Field mustard endoplasmic reticulum 41.64 24.6
PGSC0003DMT400010624 Potato endoplasmic reticulum 41.3 24.49
Solyc06g005940.2.1 Tomato nucleus, plastid 41.64 24.45
Bra017948.1-P Field mustard endoplasmic reticulum 40.61 23.9
AT1G77510.1 Thale cress endoplasmic reticulum 40.96 23.62
Bra015665.1-P Field mustard endoplasmic reticulum 40.61 23.38
AT1G21750.1 Thale cress endoplasmic reticulum 39.93 23.35
Bra008311.1-P Field mustard endoplasmic reticulum 40.61 23.29
Solyc05g056400.2.1 Tomato plastid 39.59 21.93
HORVU2Hr1G076360.1 Barley endoplasmic reticulum 36.52 20.58
PGSC0003DMT400036388 Potato endoplasmic reticulum 32.08 19.22
Solyc05g018700.2.1 Tomato plastid 31.06 18.35
HORVU6Hr1G001640.1 Barley endoplasmic reticulum 15.7 15.97
HORVU4Hr1G056730.1 Barley endoplasmic reticulum 8.19 14.63
HORVU5Hr1G114600.1 Barley endoplasmic reticulum 14.33 14.29
HORVU6Hr1G001800.2 Barley endoplasmic reticulum 14.33 13.5
HORVU2Hr1G075810.1 Barley endoplasmic reticulum 17.06 12.08
HORVU4Hr1G034020.1 Barley cytosol 5.12 11.45
HORVU6Hr1G059710.1 Barley endoplasmic reticulum 16.72 10.94
HORVU4Hr1G048980.2 Barley cytosol 9.56 9.59
HORVU1Hr1G022810.1 Barley endoplasmic reticulum 11.95 8.68
HORVU6Hr1G001700.1 Barley endoplasmic reticulum, plastid 18.77 8.66
HORVU5Hr1G067570.1 Barley plasma membrane 11.26 6.37
HORVU7Hr1G026030.1 Barley cytosol 10.24 5.12
PGSC0003DMT400060279 Potato cytosol 0.68 1.1
Protein Annotations
EnsemblPlants:HORVU4Hr1G049880.2EnsemblPlantsGene:HORVU4Hr1G049880Gene3D:3.40.30.10GO:GO:0005575GO:GO:0005623GO:GO:0008150
GO:GO:0009987GO:GO:0019725GO:GO:0045454InterPro:IPR013766InterPro:Thioredoxin-like_sfInterPro:Thioredoxin_domain
PANTHER:PTHR18929PANTHER:PTHR18929:SF186PFAM:PF00085SEG:segSUPFAM:SSF52833UniParc:UPI000B460964
UniProt:A0A287NZC6MapMan:50.5.3::::
Description
No Description!
Coordinates
chrchr4H:-:405753242..405760595
Molecular Weight (calculated)
33366.3 Da
IEP (calculated)
10.521
GRAVY (calculated)
-0.539
Length
293 amino acids
Sequence
(BLAST)
001: VQPRNRGAGG RLFRSIMPTA TTHRCRCWRR RPWRRRLSPR RPRTPRTCSP CMSTTSTTPL PSTPSSLSSS TPHVWTLQVY KSLAREYEKV AHLLSKHDPA
101: IVLAKVDAND EMNKLLAGKY EVHGFPTLKI LRNRGKNIQE YKGLREAKGI IEYSKKQVGP ASKEIKAPKD ATYLEDNKIH IVGVFMEFSG TGFTNFLEVA
201: EKLRSDYDFG HIMHANHLPR GDAAVERPLV RLFKTFNELV VDSKDFVVSA LEKLIDASST LKVVTFDKNP DNHPYLLKFF QSNAPKMRCH TYA
Best Arabidopsis Sequence Match ( AT1G21750.1 )
(BLAST)
001: MAMRGFTLFS ILVLSLCASS IRSEETETKE FVLTLDHTNF TDTINKHDFI VVEFYAPWCG HCKQLAPEYE KAASALSSNV PPVVLAKIDA SEETNREFAT
101: QYEVQGFPTI KIFRNGGKAV QEYNGPREAE GIVTYLKKQS GPASAEIKSA DDASEVVSDK KVVVVGIFPK LSGSEFDSFM AIAEKLRSEL DFAHTSDAKL
201: LPRGESSVTG PVVRLFKPFD EQFVDSKDFD GEALEKFVKE SSIPLITVFD KDPNNHPYVI KFFESTNTKA MLFINFTGEG AESLKSKYRE VATSNKGQGL
301: SFLLGDAENS QGAFQYFGLE ESQVPLIIIQ TADDKKYLKT NVEVDQIESW VKDFKDGKIA PHKKSQPIPA ENNEPVKVVV SDSLDDIVLN SGKNVLLEFY
401: APWCGHCQKL APILDEVAVS YQSDSSVVIA KLDATANDFP KDTFDVKGFP TIYFKSASGN VVVYEGDRTK EDFISFVDKN KDTVGEPKKE EETTEEVKDE
501: L
Arabidopsis Description
PDIL1-1Protein disulfide isomerase-like 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI01]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.