Factsheet for Solyc06g060290.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 5
endoplasmic reticulum 9
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045299	Potato	endoplasmic reticulum	95.43	84.1
VIT_18s0001g02510.t01	Wine grape	endoplasmic reticulum	73.97	64.93
KRH16370	Soybean	endoplasmic reticulum	70.55	62.3
KRH18702	Soybean	endoplasmic reticulum	69.86	61.82
KRH53259	Soybean	endoplasmic reticulum	70.09	61.03
GSMUA_Achr1P16970_001	Banana	endoplasmic reticulum	69.63	60.16
KRH64644	Soybean	nucleus	70.78	59.05
HORVU4Hr1G049820.1	Barley	cytosol	23.06	55.49
KRH53258	Soybean	mitochondrion	49.54	55.08
Solyc06g005940.2.1	Tomato	nucleus, plastid	62.33	54.71
GSMUA_Achr3P22070_001	Banana	endoplasmic reticulum	62.33	53.11
Os11t0199200-01	Rice	extracellular, plasma membrane	61.87	52.93
KXG28001	Sorghum	endoplasmic reticulum	60.73	51.65
Zm00001d028108_P001	Maize	mitochondrion	16.44	51.43
TraesCS4B01G101800.3	Wheat	golgi	59.82	51.17
Os04t0436300-01	Rice	endoplasmic reticulum	34.02	50.85
Solyc05g056400.2.1	Tomato	plastid	61.42	50.85
Zm00001d049099_P005	Maize	endoplasmic reticulum	61.64	50.75
TraesCS4A01G214200.2	Wheat	plastid	59.59	50.68
TraesCS4D01G098400.1	Wheat	golgi	59.36	50.49
Zm00001d007301_P001	Maize	endoplasmic reticulum	58.9	46.99
TraesCS2D01G305000.1	Wheat	endoplasmic reticulum	55.25	46.81
TraesCS2A01G306500.1	Wheat	endoplasmic reticulum	55.02	46.62
HORVU4Hr1G043910.1	Barley	extracellular	59.59	46.61
KXG26345	Sorghum	endoplasmic reticulum	55.02	46.53
TraesCS2B01G323200.1	Wheat	endoplasmic reticulum	54.79	46.33
Os02t0554900-01	Rice	plastid	57.08	45.87
Solyc05g018700.2.1	Tomato	plastid	51.83	45.77
HORVU4Hr1G049880.2	Barley	mitochondrion, plastid	28.77	43.0
Zm00001d016017_P002	Maize	cytosol	22.37	38.43
Zm00001d041417_P001	Maize	endoplasmic reticulum	17.81	35.29
Zm00001d035557_P001	Maize	mitochondrion	26.03	33.24
HORVU2Hr1G076360.1	Barley	endoplasmic reticulum	34.02	28.65
Solyc04g049450.2.1	Tomato	endoplasmic reticulum, nucleus, plastid	31.28	24.33
Solyc11g069690.1.1	Tomato	extracellular	6.85	24.0
Solyc11g069400.1.1	Tomato	plastid	31.74	23.97
Solyc06g075210.2.1	Tomato	unclear	27.63	22.04
Solyc01g100320.2.1	Tomato	extracellular	17.81	21.73
Solyc11g019920.1.1	Tomato	plastid, unclear	20.78	20.92
Solyc03g120720.2.1	Tomato	plastid	24.89	20.26
Solyc06g065320.2.1	Tomato	endoplasmic reticulum	18.49	18.33
Solyc07g049450.2.1	Tomato	nucleus	18.04	18.29

Protein Annotations

Gene3D:3.40.30.10	MapMan:50.5.3	InterPro:Disulphide_isomerase	GO:GO:0003674	GO:GO:0003756	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006457
GO:GO:0006950	GO:GO:0008150	GO:GO:0009987	GO:GO:0016853	GO:GO:0019725	GO:GO:0034976
GO:GO:0045454	InterPro:IPR013766	UniProt:K4C6L0	PFAM:PF00085	PFAM:PF13848	PRINTS:PR00421
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR18929	PANTHER:PTHR18929:SF186	InterPro:Prot_disulphide_isomerase	SUPFAM:SSF52833
SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc06g060290.2	EnsemblPlants:Solyc06g060290.2.1	TIGRFAMs:TIGR01126	TIGRFAMs:TIGR01130	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0002766152	SEG:seg	:	:

Description

Protein disulfide-isomerase [Source:UniProtKB/TrEMBL;Acc:K4C6L0]

Coordinates

chr6:-:38260021..38265200

Molecular Weight (calculated)

49246.4 Da

IEP (calculated)

4.710

GRAVY (calculated)

-0.156

Length

438 amino acids

Sequence
(BLAST)

001: MAIRVWISLF LCVFALLGSE SYASENEDTQ SKEFVVTLDH SNFSDFVGRH KFIVVEFYAP WCGHCKKLVP EYEKAAEILS QNDPPVVLAK VDANEEQNKA
101: LASEFDIKGF PTLKILRYGG SVVQDYKGPR EADGIVSYVK KQSGPASAEI KSSKDAEDFI DVNKIIIVGV FPEFSGEKFE NFTAVAERLR ADYDFGHTLD
201: AKLLPRGDSS VSGPVVRLFK PFDELFVDFQ VFDVDALAKL VEEATIPTVT VFNKDPNNHP FVVKFFNSPN AKAMLFVNFN IFDSFKSKYH EVAEQYKGND
301: ISFLIGDVEA SQGAFQYFGL KEDQTPLIII QTNEGEKYLK TNVEPDHIAS WVKEFKDGKV KPYKKSEPIP EVNNEPVKVV VADNFQDMVF NSGKNVLIEF
401: YAPWCGHCKQ LAPILDEVAV SFESDADVMI AKIVRCYC

Best Arabidopsis Sequence Match ( AT1G21750.2 )
(BLAST)

001: MAMRGFTLFS ILVLSLCASS IRSEETETKE FVLTLDHTNF TDTINKHDFI VVEFYAPWCG HCKQLAPEYE KAASALSSNV PPVVLAKIDA SEETNREFAT
101: QYEVQGFPTI KIFRNGGKAV QEYNGPREAE GIVTYLKKQS GPASAEIKSA DDASEVVSDK KVVVVGIFPK LSGSEFDSFM AIAEKLRSEL DFAHTSDAKL
201: LPRGESSVTG PVVRLFKPFD EQFVDSKDFD GEALEKFVKE SSIPLITVFD KDPNNHPYVI KFFESTNTKA MLFINFTGEG AESLKSKYRE VATSNKGQGL
301: SFLLGDAENS QGAFQYFGLE ESQVPLIIIQ TADDKKYLKT NVEVDQIESW VKDFKDGKIA PHKKSQPIPA ENNEPVKVVV SDSLDDIVLN SGKNVLLEFY
401: APWCGHCQKL APILDEVAVS YQSDSSVVIA KLDATANDFP KDTFDVKGFP TIYFKSASGN VVVYEGDRQR ESLYLFIRFL YVHSSEQ

Arabidopsis Description

PDIL1-1Protein disulfide isomerase-like 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI01]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.