Factsheet for Solyc11g019920.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid

Predictor Summary:

extracellular 6
endoplasmic reticulum 7
vacuole 5
plasma membrane 6
golgi 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, unclear
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

plastid: 22908117
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070983	Potato	endoplasmic reticulum	95.86	96.08
Solyc06g065320.2.1	Tomato	endoplasmic reticulum	71.49	70.36
VIT_18s0075g00210.t01	Wine grape	endoplasmic reticulum	57.24	62.88
AT1G35620.1	Thale cress	endoplasmic reticulum	57.01	56.36
Bra034408.1-P	Field mustard	endoplasmic reticulum	55.63	55.63
CDY37102	Canola	endoplasmic reticulum	55.63	55.63
KRH34995	Soybean	endoplasmic reticulum	54.94	55.2
CDX73337	Canola	endoplasmic reticulum	54.71	54.71
GSMUA_Achr5P17020_001	Banana	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	55.86	54.48
Os04t0432500-01	Rice	plasma membrane	52.87	54.37
EES12182	Sorghum	endoplasmic reticulum	52.18	54.31
Zm00001d025131_P001	Maize	extracellular, plasma membrane	52.41	54.29
HORVU2Hr1G075810.1	Barley	endoplasmic reticulum	51.49	54.11
TraesCS2A01G304300.1	Wheat	endoplasmic reticulum	51.26	54.0
TraesCS2B01G321000.1	Wheat	golgi	51.72	53.96
GSMUA_Achr3P19080_001	Banana	endoplasmic reticulum, golgi, plasma membrane	53.56	52.6
Zm00001d016786_P001	Maize	plasma membrane	50.34	52.14
Zm00001d003654_P001	Maize	endoplasmic reticulum	52.18	51.36
Os02t0550300-00	Rice	endoplasmic reticulum	49.89	51.18
TraesCS6A01G220100.1	Wheat	golgi	48.74	51.08
TraesCS6B01G261500.2	Wheat	endoplasmic reticulum	48.97	50.96
TraesCS6D01G215100.1	Wheat	endoplasmic reticulum	48.74	50.84
TraesCS2D01G302900.1	Wheat	endoplasmic reticulum	51.03	49.22
HORVU6Hr1G059710.1	Barley	endoplasmic reticulum	48.74	47.32
OQU85098	Sorghum	endoplasmic reticulum	50.11	44.49
Solyc11g069690.1.1	Tomato	extracellular	6.9	24.0
Solyc06g060290.2.1	Tomato	plastid	20.92	20.78
Solyc06g005940.2.1	Tomato	nucleus, plastid	21.61	18.84
Solyc05g056400.2.1	Tomato	plastid	21.38	17.58
Solyc01g100320.2.1	Tomato	extracellular	13.56	16.43
Solyc11g069400.1.1	Tomato	plastid	21.84	16.38
Solyc05g018700.2.1	Tomato	plastid	17.93	15.73
Solyc03g120720.2.1	Tomato	plastid	18.85	15.24
Solyc04g049450.2.1	Tomato	endoplasmic reticulum, nucleus, plastid	19.54	15.1
Solyc06g075210.2.1	Tomato	unclear	18.62	14.75
Solyc07g049450.2.1	Tomato	nucleus	11.95	12.04

Protein Annotations

MapMan:18.11.1.3	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003756	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006457	GO:GO:0006950
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019725	GO:GO:0034976
GO:GO:0045454	InterPro:IPR013766	UniProt:K4D6U5	PFAM:PF00085	PFAM:PF13848	PRINTS:PR00421
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR18929	PANTHER:PTHR18929:SF137	SUPFAM:SSF52833	SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc11g019920.1	EnsemblPlants:Solyc11g019920.1.1	TMHMM:TMhelix	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
UniParc:UPI0002769383	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:+:9781305..9788278

Molecular Weight (calculated)

49305.1 Da

IEP (calculated)

4.855

GRAVY (calculated)

-0.068

Length

435 amino acids

Sequence
(BLAST)

001: MVPFISISIF TFGFLLLFRC SSSSAEQQQF AIDGKVLELD ESNFEAAIST FDYMFVDFYA PWCGHCKRLS PELDKASANL AVLKQPIVIA KVDADKYSRL
101: ASKYEIDGFP TLKIFMHGVP TDYYGPRKAD LLVRFLKKFV APDVSVLNSD SAISEFIEEA GKNFPIFIGF GLNESVISHL AVKYKKSAWF SVAKDFSDTT
201: MEFYDFDKVP ALVTLHLSYN EQSIFYGPFE EKFLEDYIKQ SLLPLVLPIN QDTLKSLKDD KRKIVLTIVE DEDDERSKRL VKLLKAAASA NRDLVFAFVG
301: FKQWQDFAES FEVSKKIKLP KMIVWDGDVE YFSVIGSDSV EDEDQGSQIT RFLKGYRDGS VIQKHIISDD YKAFRNSMFL IGALILVLVV ILVAMMMQAV
401: KEEPSREQVD HPGSSTSLSE AREALRSGDK EEKID

Best Arabidopsis Sequence Match ( AT1G35620.1 )
(BLAST)

001: MRSLKLLLCW ISFLTLSISI SASSDDQFTL DGTVLELTDS NFDSAISTFD CIFVDFYAPW CGHCKRLNPE LDAAAPILAK LKQPIVIAKL NADKYSRLAR
101: KIEIDAFPTL MLYNHGVPME YYGPRKADLL VRYLKKFVAP DVAVLESDST VKEFVEDAGT FFPVFIGFGL NESIISGLGR KYKKKAWFAV SKEVSEDTMV
201: SYDFDKAPAL VANHPTYNEH SVFYGPFEDG FLEEFVKQSF LPLILPINHD TLKLLKDDER KIVLTIVEDE THESLEKLYK ALRAAAHANR DLVFGYVGVK
301: QFEEFVDSFH VDKKTNLPKI VVWDGDEEYD QVTGIETITQ EEDHLTQVSR FLEGYREGRT EKKKINGPSF MGFINSMIGI RSVYILVFLV AVIMMLRSLG
401: QVEEPTGVRT ATAVRERVDQ ATTVPEDESS EHKPSDKKED

Arabidopsis Description

PDIL5-2Protein disulfide-isomerase 5-2 [Source:UniProtKB/Swiss-Prot;Acc:Q94F09]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.