Factsheet for Solyc06g005940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

extracellular 6
endoplasmic reticulum 9
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g078540.2.1
Solyc12g088670.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21750.1	Solyc04g078540.2.1	AT1G47128.1	18676877
AT1G21750.1	Solyc12g088670.1.1	AT1G47128.1	18676877
AT1G21750.1	Solyc04g078540.2.1	AT5G43060.1	18676877
AT1G21750.1	Solyc12g088670.1.1	AT5G43060.1	18676877

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010624	Potato	endoplasmic reticulum	83.57	84.41
Solyc05g056400.2.1	Tomato	plastid	66.53	62.76
Solyc06g060290.2.1	Tomato	plastid	54.71	62.33
GSMUA_Achr1P16970_001	Banana	endoplasmic reticulum	57.31	56.41
CDY38821	Canola	cytosol, endoplasmic reticulum	56.11	56.0
AT1G21750.1	Thale cress	endoplasmic reticulum	55.91	55.69
Bra016405.1-P	Field mustard	endoplasmic reticulum	55.71	55.49
CDX96575	Canola	endoplasmic reticulum	55.51	55.29
Bra012293.1-P	Field mustard	endoplasmic reticulum	54.11	54.44
CDY01314	Canola	endoplasmic reticulum	54.11	54.44
CDY00400	Canola	endoplasmic reticulum	54.91	54.37
Os11t0199200-01	Rice	extracellular, plasma membrane	55.51	54.1
AT1G77510.1	Thale cress	endoplasmic reticulum	54.11	53.15
CDY04673	Canola	endoplasmic reticulum	52.51	52.61
CDY08176	Canola	endoplasmic reticulum	52.3	52.41
Bra017948.1-P	Field mustard	endoplasmic reticulum	52.3	52.41
CDX87514	Canola	endoplasmic reticulum	53.31	52.26
TraesCS4A01G214200.2	Wheat	plastid	53.91	52.23
TraesCS4B01G101800.3	Wheat	golgi	53.51	52.15
Zm00001d028108_P001	Maize	mitochondrion	14.63	52.14
Bra015665.1-P	Field mustard	endoplasmic reticulum	53.11	52.06
CDX88376	Canola	cytosol, endoplasmic reticulum	53.31	52.05
TraesCS4D01G098400.1	Wheat	golgi	53.51	51.84
CDY40898	Canola	endoplasmic reticulum	52.91	51.76
HORVU4Hr1G049820.1	Barley	cytosol	18.84	51.65
CDY38344	Canola	endoplasmic reticulum	52.71	51.47
Bra008311.1-P	Field mustard	endoplasmic reticulum	52.71	51.47
Zm00001d049099_P005	Maize	endoplasmic reticulum	54.51	51.13
GSMUA_Achr3P22070_001	Banana	endoplasmic reticulum	52.3	50.78
KXG28001	Sorghum	endoplasmic reticulum	51.5	49.9
Solyc05g018700.2.1	Tomato	plastid	47.9	48.19
HORVU4Hr1G043910.1	Barley	extracellular	53.91	48.04
Zm00001d007301_P001	Maize	endoplasmic reticulum	52.1	47.36
Os04t0436300-01	Rice	endoplasmic reticulum	27.66	47.1
KXG26345	Sorghum	endoplasmic reticulum	48.5	46.72
TraesCS2D01G305000.1	Wheat	endoplasmic reticulum	47.09	45.45
TraesCS2A01G306500.1	Wheat	endoplasmic reticulum	46.69	45.07
TraesCS2B01G323200.1	Wheat	endoplasmic reticulum	46.69	44.98
Os02t0554900-01	Rice	plastid	48.1	44.04
HORVU4Hr1G049880.2	Barley	mitochondrion, plastid	24.45	41.64
Zm00001d016017_P002	Maize	cytosol	20.24	39.61
Zm00001d041417_P001	Maize	endoplasmic reticulum	15.83	35.75
Zm00001d035557_P001	Maize	mitochondrion	23.85	34.69
HORVU2Hr1G076360.1	Barley	endoplasmic reticulum	27.86	26.73
Solyc11g069400.1.1	Tomato	plastid	29.86	25.69
Solyc04g049450.2.1	Tomato	endoplasmic reticulum, nucleus, plastid	28.66	25.4
Solyc06g075210.2.1	Tomato	unclear	25.65	23.32
Solyc01g100320.2.1	Tomato	extracellular	16.03	22.28
Solyc11g019920.1.1	Tomato	plastid, unclear	18.84	21.61
Solyc11g069690.1.1	Tomato	extracellular	5.21	20.8
Solyc06g065320.2.1	Tomato	endoplasmic reticulum	18.24	20.59
Solyc03g120720.2.1	Tomato	plastid	20.84	19.33
Solyc07g049450.2.1	Tomato	nucleus	15.63	18.06

Protein Annotations

Gene3D:3.40.30.10	MapMan:50.5.3	InterPro:Disulphide_isomerase	GO:GO:0003674	GO:GO:0003756	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006457
GO:GO:0006950	GO:GO:0008150	GO:GO:0009987	GO:GO:0016853	GO:GO:0019725	GO:GO:0034976
GO:GO:0045454	InterPro:IPR013766	UniProt:K4C376	PFAM:PF00085	PFAM:PF13848	PRINTS:PR00421
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR18929	PANTHER:PTHR18929:SF186	InterPro:Prot_disulphide_isomerase	SUPFAM:SSF52833
SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc06g005940.2	EnsemblPlants:Solyc06g005940.2.1	TIGRFAMs:TIGR01126	TIGRFAMs:TIGR01130	TMHMM:TMhelix
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0002765F24	SEG:seg	:

Description

Protein disulfide-isomerase [Source:UniProtKB/TrEMBL;Acc:K4C376]

Coordinates

chr6:-:921114..925482

Molecular Weight (calculated)

55741.6 Da

IEP (calculated)

4.974

GRAVY (calculated)

-0.212

Length

499 amino acids

Sequence
(BLAST)

001: MAKSGILVIV SALVVLAVCG VFAEENEYVL TLDHSNLTET VAKHNFIVVE FYAPWCGHCK SLAPEYEKAA SELSSHDPPI VLAKYDANDE ANRELSKQYE
101: IQGFPTIKIL RDGGKKVQDY NGPREAAGIV SYLKKQVGPA SAEIKSKEDA TNLIDEKSIF VVGIFPDPSG EKFENYLTLA EKLRGEFDFA HTVDAKHLPR
201: GGPVNKPTLR LLKPFDELFV DFEDFDVDAM EKFISESSIP VVTIFDNDPN NHPYVNKFFE GTNAKALLFV NFSSEFDAFK SKYNDVAVIY KGDGVSFLLG
301: DVEAGQGAFE YFGLKPEQAP VIIIMDADEQ KYIKDHVEPD AIAAYLKDYK EGKLKPHVKS EPIPEVNDEP VKVVVRDTLQ DMVYKSGKNV LLEFYAPWCG
401: HCKSLAPILD EVAVSFESDP DVLIAKLDMT QPQMISRKVT LMFRDSLLCT SDPPLVTCHS TMVREQKRLS SNSSRRIVAS LLSQTLPKSI QQRMNFRGL

Best Arabidopsis Sequence Match ( AT1G21750.2 )
(BLAST)

001: MAMRGFTLFS ILVLSLCASS IRSEETETKE FVLTLDHTNF TDTINKHDFI VVEFYAPWCG HCKQLAPEYE KAASALSSNV PPVVLAKIDA SEETNREFAT
101: QYEVQGFPTI KIFRNGGKAV QEYNGPREAE GIVTYLKKQS GPASAEIKSA DDASEVVSDK KVVVVGIFPK LSGSEFDSFM AIAEKLRSEL DFAHTSDAKL
201: LPRGESSVTG PVVRLFKPFD EQFVDSKDFD GEALEKFVKE SSIPLITVFD KDPNNHPYVI KFFESTNTKA MLFINFTGEG AESLKSKYRE VATSNKGQGL
301: SFLLGDAENS QGAFQYFGLE ESQVPLIIIQ TADDKKYLKT NVEVDQIESW VKDFKDGKIA PHKKSQPIPA ENNEPVKVVV SDSLDDIVLN SGKNVLLEFY
401: APWCGHCQKL APILDEVAVS YQSDSSVVIA KLDATANDFP KDTFDVKGFP TIYFKSASGN VVVYEGDRQR ESLYLFIRFL YVHSSEQ

Arabidopsis Description

PDIL1-1Protein disulfide isomerase-like 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI01]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.