Factsheet for TraesCS4D01G098400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 7
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

golgi: 23128297
golgi: 25769308
unclear: 25769308
nucleus: 26579155

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS2A01G512100.1
TraesCS2A01G545700.1
TraesCS2A01G546300.1
TraesCS2A01G546700.1
TraesCS2B01G540100.2
TraesCS2B01G576300.1
TraesCS2B01G577300.1
TraesCS2B01G577500.1
TraesCS2D01G513600.1
TraesCS2D01G546600.1
TraesCS2D01G547600.1
TraesCS2D01G547800.1
TraesCS5D01G149800.1
TraesCS7A01G264200.1
TraesCS7A01G562100.1
TraesCS7B01G162200.1
TraesCS7D01G001000.1
TraesCS7D01G265100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21750.1	TraesCS2A01G512100.1	AT1G47128.1	18676877
AT1G21750.1	TraesCS2B01G540100.2	AT1G47128.1	18676877
AT1G21750.1	TraesCS2D01G513600.1	AT1G47128.1	18676877
AT1G21750.1	TraesCS2A01G545700.1	AT3G19390.1	18676877
AT1G21750.1	TraesCS2A01G546300.1	AT3G19390.1	18676877
AT1G21750.1	TraesCS2A01G546700.1	AT3G19390.1	18676877
AT1G21750.1	TraesCS2B01G576300.1	AT3G19390.1	18676877
AT1G21750.1	TraesCS2B01G577300.1	AT3G19390.1	18676877
AT1G21750.1	TraesCS2B01G577500.1	AT3G19390.1	18676877
AT1G21750.1	TraesCS2D01G546600.1	AT3G19390.1	18676877
AT1G21750.1	TraesCS2D01G547600.1	AT3G19390.1	18676877
AT1G21750.1	TraesCS2D01G547800.1	AT3G19390.1	18676877
AT1G21750.1	TraesCS5D01G149800.1	AT3G19390.1	18676877
AT1G21750.1	TraesCS7A01G264200.1	AT3G19390.1	18676877
AT1G21750.1	TraesCS7B01G162200.1	AT3G19390.1	18676877
AT1G21750.1	TraesCS7D01G265100.1	AT3G19390.1	18676877
AT1G21750.1	TraesCS2A01G545700.1	AT3G19400.1	18676877
AT1G21750.1	TraesCS2A01G546300.1	AT3G19400.1	18676877
AT1G21750.1	TraesCS2A01G546700.1	AT3G19400.1	18676877
AT1G21750.1	TraesCS2B01G576300.1	AT3G19400.1	18676877
AT1G21750.1	TraesCS2B01G577300.1	AT3G19400.1	18676877
AT1G21750.1	TraesCS2B01G577500.1	AT3G19400.1	18676877
AT1G21750.1	TraesCS2D01G546600.1	AT3G19400.1	18676877
AT1G21750.1	TraesCS2D01G547600.1	AT3G19400.1	18676877
AT1G21750.1	TraesCS2D01G547800.1	AT3G19400.1	18676877
AT1G21750.1	TraesCS5D01G149800.1	AT3G19400.1	18676877
AT1G21750.1	TraesCS7A01G264200.1	AT3G19400.1	18676877
AT1G21750.1	TraesCS7B01G162200.1	AT3G19400.1	18676877
AT1G21750.1	TraesCS7D01G265100.1	AT3G19400.1	18676877
AT1G21750.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT1G21750.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT1G21750.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT1G21750.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT1G21750.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT1G21750.1	TraesCS7D01G001000.1	AT5G42980.1	15352244
AT1G21750.1	TraesCS2A01G512100.1	AT5G43060.1	18676877
AT1G21750.1	TraesCS2B01G540100.2	AT5G43060.1	18676877
AT1G21750.1	TraesCS2D01G513600.1	AT5G43060.1	18676877

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G101800.3	Wheat	golgi	98.25	98.83
TraesCS4A01G214200.2	Wheat	plastid	97.86	97.86
HORVU4Hr1G043910.1	Barley	extracellular	96.31	88.57
Os11t0199200-01	Rice	extracellular, plasma membrane	85.63	86.13
KXG28001	Sorghum	endoplasmic reticulum	79.42	79.42
Zm00001d007301_P001	Maize	endoplasmic reticulum	78.06	73.22
Zm00001d049099_P005	Maize	endoplasmic reticulum	74.17	71.8
GSMUA_Achr1P16970_001	Banana	endoplasmic reticulum	61.36	62.33
Solyc06g060290.2.1	Tomato	plastid	50.49	59.36
Bra016405.1-P	Field mustard	endoplasmic reticulum	57.28	58.88
PGSC0003DMT400045299	Potato	endoplasmic reticulum	56.7	58.75
Bra012293.1-P	Field mustard	endoplasmic reticulum	56.5	58.67
PGSC0003DMT400010624	Potato	endoplasmic reticulum	55.15	57.49
AT1G21750.1	Thale cress	endoplasmic reticulum	55.92	57.48
GSMUA_Achr3P22070_001	Banana	endoplasmic reticulum	56.5	56.61
AT1G77510.1	Thale cress	endoplasmic reticulum	54.76	55.51
Bra015665.1-P	Field mustard	endoplasmic reticulum	54.56	55.21
Bra017948.1-P	Field mustard	endoplasmic reticulum	52.62	54.42
Bra008311.1-P	Field mustard	endoplasmic reticulum	53.2	53.62
Solyc06g005940.2.1	Tomato	nucleus, plastid	51.84	53.51
TraesCS2D01G305000.1	Wheat	endoplasmic reticulum	53.4	53.19
Solyc05g056400.2.1	Tomato	plastid	52.82	51.42
PGSC0003DMT400060279	Potato	cytosol	18.06	51.1
PGSC0003DMT400036388	Potato	endoplasmic reticulum	44.47	46.83
Solyc05g018700.2.1	Tomato	plastid	42.72	44.35
TraesCS1D01G106500.1	Wheat	endoplasmic reticulum	19.81	27.79
TraesCS6D01G005200.1	Wheat	golgi	30.87	27.04
TraesCS6D01G004700.1	Wheat	endoplasmic reticulum	30.49	26.75
TraesCS4D01G197000.1	Wheat	endoplasmic reticulum	7.57	25.83
TraesCS5D01G241200.1	Wheat	golgi	19.61	22.95
TraesCS6D01G215100.1	Wheat	endoplasmic reticulum	17.67	21.82
TraesCS7D01G121800.1	Wheat	endoplasmic reticulum	21.55	20.4
TraesCS6D01G004600.2	Wheat	endoplasmic reticulum	13.2	20.12
TraesCS2D01G302900.1	Wheat	endoplasmic reticulum	17.48	19.96

Protein Annotations

Gene3D:3.40.30.10	MapMan:50.5.3	InterPro:Disulphide_isomerase	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005788
GO:GO:0007275	GO:GO:0008150	GO:GO:0009791	GO:GO:0009960	GO:GO:0009987	GO:GO:0016853
GO:GO:0019725	GO:GO:0034975	GO:GO:0045454	InterPro:IPR013766	PFAM:PF00085	PFAM:PF13848
PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR18929	PANTHER:PTHR18929:SF186	InterPro:Prot_disulphide_isomerase
SUPFAM:SSF52833	SignalP:SignalP-noTM	TIGRFAMs:TIGR01126	TIGRFAMs:TIGR01130	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	EnsemblPlantsGene:TraesCS4D01G098400	EnsemblPlants:TraesCS4D01G098400.1	TIGR:cd02961	TIGR:cd02981	TIGR:cd02982
TIGR:cd02995	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:75228948..75232216

Molecular Weight (calculated)

56631.9 Da

IEP (calculated)

4.702

GRAVY (calculated)

-0.246

Length

515 amino acids

Sequence
(BLAST)

001: MAICKAWISL LLALAVVLSA PAARAEEAAA AAEEAAAPEA VLTLHADNFD DAIAKHPFIL VEFYAPWCGH CKSLAPEYEK AAQLLSKHDP AIVLAKVDAN
101: DEKNKPLAGK YEVQGFPTLK IFRNGGKNIQ EYKGPREAEG IVEYLKKQVG PASKEIKAPE DATYLEDGKI HIVGVFTEFS GTEFTNFLEV AEKLRSDYDF
201: GHTVHANHLP RGDAAVERPL VRLFKPFDEL VVDSKDFDVS ALEKFIDASS TPKVVTFDKN PDNHPYLLKF FQTNAPKAML FLNFSTGPFE SFKSAYYGAV
301: EEFSGKDVKF LIGDIEASQG AFQYFGLKED QAPLILIQDS DSKKFLKEQV EAGQIVAWLK DYFDGKLTPF RKSEPIPEAN NEPVKVVVAD NVHDVVFKSG
401: KNVLIEFYAP WCGHCKKLAP ILDEAAATLQ SEEDVVIAKM DATANDVPSE FDVQGYPTLY FVTPSGKKVS YEGGRTADEI VDYIKKNKET AGQAAAADTE
501: KAAEPAATEP LKDEL

Best Arabidopsis Sequence Match ( AT1G21750.1 )
(BLAST)

001: MAMRGFTLFS ILVLSLCASS IRSEETETKE FVLTLDHTNF TDTINKHDFI VVEFYAPWCG HCKQLAPEYE KAASALSSNV PPVVLAKIDA SEETNREFAT
101: QYEVQGFPTI KIFRNGGKAV QEYNGPREAE GIVTYLKKQS GPASAEIKSA DDASEVVSDK KVVVVGIFPK LSGSEFDSFM AIAEKLRSEL DFAHTSDAKL
201: LPRGESSVTG PVVRLFKPFD EQFVDSKDFD GEALEKFVKE SSIPLITVFD KDPNNHPYVI KFFESTNTKA MLFINFTGEG AESLKSKYRE VATSNKGQGL
301: SFLLGDAENS QGAFQYFGLE ESQVPLIIIQ TADDKKYLKT NVEVDQIESW VKDFKDGKIA PHKKSQPIPA ENNEPVKVVV SDSLDDIVLN SGKNVLLEFY
401: APWCGHCQKL APILDEVAVS YQSDSSVVIA KLDATANDFP KDTFDVKGFP TIYFKSASGN VVVYEGDRTK EDFISFVDKN KDTVGEPKKE EETTEEVKDE
501: L

Arabidopsis Description

PDIL1-1Protein disulfide isomerase-like 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI01]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.