Factsheet for TraesCS6D01G005200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 7
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

golgi: 23128297
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G004700.1	Wheat	endoplasmic reticulum	95.41	95.57
TraesCS6B01G005500.1	Wheat	endoplasmic reticulum	89.12	88.22
HORVU6Hr1G001700.1	Barley	endoplasmic reticulum, plastid	88.61	82.05
Os02t0100100-01	Rice	plasma membrane	70.75	73.89
EES06089	Sorghum	endoplasmic reticulum	70.41	72.38
Zm00001d014912_P003	Maize	extracellular, plasma membrane	67.86	71.12
Zm00001d054106_P003	Maize	endoplasmic reticulum	69.05	71.1
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum	47.45	60.78
KRH22896	Soybean	endoplasmic reticulum	56.8	59.86
PGSC0003DMT400033517	Potato	endoplasmic reticulum, mitochondrion	53.74	56.13
Solyc04g049450.2.1	Tomato	endoplasmic reticulum, nucleus, plastid	53.57	55.95
VIT_13s0019g04240.t01	Wine grape	endoplasmic reticulum	53.23	55.79
VIT_06s0004g02890.t01	Wine grape	endoplasmic reticulum	54.42	55.46
KRH24870	Soybean	endoplasmic reticulum	54.42	55.27
KRH29922	Soybean	endoplasmic reticulum	54.93	55.12
KRH26418	Soybean	endoplasmic reticulum	55.61	54.32
TraesCS6D01G004600.2	Wheat	endoplasmic reticulum	30.78	53.55
Bra007120.1-P	Field mustard	endoplasmic reticulum	52.72	53.54
CDY56958	Canola	endoplasmic reticulum	52.72	53.54
Bra002464.1-P	Field mustard	endoplasmic reticulum	54.25	53.52
CDX73422	Canola	endoplasmic reticulum	52.38	53.47
CDY31525	Canola	endoplasmic reticulum	53.91	53.19
CDY53631	Canola	endoplasmic reticulum	53.74	53.02
AT5G60640.1	Thale cress	endoplasmic reticulum	53.74	52.93
AT3G54960.1	Thale cress	endoplasmic reticulum	51.53	52.33
PGSC0003DMT400020867	Potato	endoplasmic reticulum	51.19	51.99
CDY09193	Canola	endoplasmic reticulum	51.7	51.79
Solyc11g069400.1.1	Tomato	plastid	51.02	51.72
Bra020239.1-P	Field mustard	endoplasmic reticulum	51.36	51.36
PGSC0003DMT400008689	Potato	endoplasmic reticulum	47.11	50.09
Solyc06g075210.2.1	Tomato	unclear	45.58	48.82
TraesCS7D01G121800.1	Wheat	endoplasmic reticulum	28.91	31.25
TraesCS4D01G098400.1	Wheat	golgi	27.04	30.87
TraesCS2D01G305000.1	Wheat	endoplasmic reticulum	25.68	29.21
TraesCS1D01G106500.1	Wheat	endoplasmic reticulum	15.99	25.61
TraesCS6D01G215100.1	Wheat	endoplasmic reticulum	15.99	22.54
TraesCS5D01G241200.1	Wheat	golgi	16.5	22.05
TraesCS2D01G302900.1	Wheat	endoplasmic reticulum	16.67	21.73
TraesCS4D01G197000.1	Wheat	endoplasmic reticulum	5.44	21.19

Protein Annotations

Gene3D:3.40.30.10	MapMan:50.5.3	InterPro:Disulphide_isomerase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0008150	GO:GO:0009987
GO:GO:0016853	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	PFAM:PF00085	PFAM:PF13848
PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR18929	PANTHER:PTHR18929:SF121	InterPro:Prot_disulphide_isomerase
SUPFAM:SSF52833	SignalP:SignalP-noTM	TIGRFAMs:TIGR01126	TIGRFAMs:TIGR01130	TMHMM:TMhelix	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	EnsemblPlantsGene:TraesCS6D01G005200	EnsemblPlants:TraesCS6D01G005200.1	TIGR:cd02961	TIGR:cd02981
TIGR:cd02982	TIGR:cd02995	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6D:-:2274574..2279614

Molecular Weight (calculated)

63855.2 Da

IEP (calculated)

4.351

GRAVY (calculated)

-0.198

Length

588 amino acids

Sequence
(BLAST)

001: MAAMPMPRSL LLILLLATPL LILPLAAAAV PTSNPDIDLE YLIKNAGLDD PTPATTATDP EDDGAPDFPG LDADYDDEDL FGDDDGPEED SSHPSAADEA
101: HVLLLTAANF TSVLAARRHV MVEFYAPWCG HCRALAPHYA AAASALAEQG VDVALAKVDA TEDHDLAQAH GVQGYPTLLF FIDGVPRDYA GERTKDAIVA
201: WISKKLGPAV QNLTTADEAE KIVTGDDVAV LAYLDHLSGA HSDELAAASR LEDTISFYQT TSPDVAKLFH IDPEAKRPSV VLLKKEEEKL TVFDGEFRAS
301: AIAEFVSANK IPLITTLTQE TAPAIFDNPI KKQILLFAVA KESPQFLPII KETAKSFKGK LLFVFVERDN EEVGEPVANY FGIAGQETTV LAYTGNEDAK
401: KFFFSGEISL DTIKEFAQDF LEDKLTPSYK SDPVPESNDE DVKVVVGKSL DQIVLDESKD VLLEVYAPWC GHCQSLEPIY NKLAKYLRGI DSLVIAKMDG
501: TNNEHPRAKP DGFPTILFYP AGKKSFEPIT FEGDRTVVEM YKFLKKHAAI PFKLKRPDSS AARTDGADGS GSTTEGEKSS GSNPKDEL

Best Arabidopsis Sequence Match ( AT5G60640.1 )
(BLAST)

001: MAFRVLLLFS LTALLIFSAV SPSFAASSSD DVDDEDLSFL EDLKEDDVPG ADSLSSSTGF DEFEGGEEED PDMYNDDDDE EGDFSDLGNP DSDPLPTPEI
101: DEKDVVVIKE RNFTDVIENN QYVLVEFYAP WCGHCQSLAP EYAAAATELK EDGVVLAKID ATEENELAQE YRVQGFPTLL FFVDGEHKPY TGGRTKETIV
201: TWVKKKIGPG VYNLTTLDDA EKVLTSGNKV VLGYLNSLVG VEHDQLNAAS KAEDDVNFYQ TVNPDVAKMF HLDPESKRPA LVLVKKEEEK ISHFDGEFVK
301: SALVSFVSAN KLALVSVFTR ETAPEIFESA IKKQLLLFVT KNESEKVLTE FQEAAKSFKG KLIFVSVDLD NEDYGKPVAE YFGVSGNGPK LIGYTGNEDP
401: KKYFFDGEIQ SDKIKIFGED FLNDKLKPFY KSDPIPEKND EDVKIVVGDN FDEIVLDDSK DVLLEVYAPW CGHCQALEPM YNKLAKHLRS IDSLVITKMD
501: GTTNEHPKAK AEGFPTILFF PAGNKTSEPI TVDTDRTVVA FYKFLRKHAT IPFKLEKPAS TESPKTAEST PKVETTETKE SPDSTTKSSQ SDSKDEL

Arabidopsis Description

PDIL1-4Protein disulfide-isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UQB2]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.