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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 9
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • plastid 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:nucleus, plastid, secretory
BaCelLo:secretory
EpiLoc:endoplasmic reticulum
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:endoplasmic reticulum
 nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH29922 Soybean endoplasmic reticulum 93.26 92.15
KRH22896 Soybean endoplasmic reticulum 73.92 76.7
GSMUA_Achr11P... Banana cytosol, endoplasmic reticulum 60.1 75.16
GSMUA_Achr8P18890_001 Banana cytosol 58.89 73.33
KRH26418 Soybean endoplasmic reticulum 74.61 71.76
VIT_06s0004g02890.t01 Wine grape endoplasmic reticulum 71.33 71.58
PGSC0003DMT400033517 Potato endoplasmic reticulum, mitochondrion 63.9 65.72
Solyc04g049450.2.1 Tomato endoplasmic reticulum, nucleus, plastid 63.56 65.36
CDY53631 Canola endoplasmic reticulum 65.98 64.09
CDY09193 Canola endoplasmic reticulum 64.94 64.05
Bra002464.1-P Field mustard endoplasmic reticulum 65.8 63.93
CDY31525 Canola endoplasmic reticulum 65.8 63.93
AT5G60640.1 Thale cress endoplasmic reticulum 65.63 63.65
Bra020239.1-P Field mustard endoplasmic reticulum 64.42 63.44
Os02t0100100-01 Rice plasma membrane 57.51 59.15
Bra007120.1-P Field mustard endoplasmic reticulum 58.72 58.72
CDY56958 Canola endoplasmic reticulum 58.72 58.72
CDX73422 Canola endoplasmic reticulum 58.38 58.68
AT3G54960.1 Thale cress endoplasmic reticulum 57.86 57.86
EES06089 Sorghum endoplasmic reticulum 55.79 56.47
TraesCS6A01G000600.1 Wheat endoplasmic reticulum 55.61 55.61
Zm00001d054106_P003 Maize endoplasmic reticulum 54.75 55.52
Zm00001d014912_P003 Maize extracellular, plasma membrane 53.71 55.44
TraesCS6A01G001100.1 Wheat endoplasmic reticulum 55.44 55.15
TraesCS6D01G004700.1 Wheat endoplasmic reticulum 55.44 54.68
TraesCS6D01G005200.1 Wheat golgi 55.27 54.42
TraesCS3B01G532200.1 Wheat endoplasmic reticulum 55.09 54.25
TraesCS6B01G005500.1 Wheat endoplasmic reticulum 53.54 52.19
HORVU6Hr1G001700.1 Barley endoplasmic reticulum, plastid 55.27 50.39
KRH69241 Soybean endoplasmic reticulum 5.87 40.48
TraesCS6B01G005100.1 Wheat endoplasmic reticulum 27.12 39.05
KRH53259 Soybean endoplasmic reticulum 28.15 32.41
KRH23443 Soybean endoplasmic reticulum 27.46 32.06
KRH16370 Soybean endoplasmic reticulum 27.29 31.85
KRH18702 Soybean endoplasmic reticulum 26.94 31.52
KRH09876 Soybean endoplasmic reticulum 28.15 31.17
KRH53258 Soybean mitochondrion 20.9 30.71
KRH64644 Soybean nucleus 27.81 30.67
KRH31823 Soybean endoplasmic reticulum 18.31 29.12
KRH68449 Soybean endoplasmic reticulum 16.75 26.8
KRH64647 Soybean cytosol, mitochondrion 9.5 25.94
KRH34995 Soybean endoplasmic reticulum 19.34 25.87
KRH69242 Soybean cytosol 12.26 25.0
KRG96732 Soybean endoplasmic reticulum 16.41 24.87
KRH54865 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 12.09 22.08
KRH14820 Soybean endoplasmic reticulum 15.37 20.32
KRH10410 Soybean endoplasmic reticulum 4.84 19.86
KRH73319 Soybean endoplasmic reticulum 14.85 19.63
KRH22935 Soybean endoplasmic reticulum 4.84 19.05
Protein Annotations
EntrezGene:100785630Gene3D:3.40.30.10MapMan:50.5.3EMBL:ACUP02007190InterPro:Disulphide_isomeraseEnsemblPlantsGene:GLYMA_12G067700
GO:GO:0003674GO:GO:0003756GO:GO:0003824GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0006457GO:GO:0006950GO:GO:0008150GO:GO:0009987
GO:GO:0016853GO:GO:0019725GO:GO:0034976GO:GO:0045454UniProt:I1LQV6InterPro:IPR013766
EnsemblPlants:KRH24870ProteinID:KRH24870ProteinID:KRH24870.1PFAM:PF00085PFAM:PF13848PRINTS:PR00421
ScanProsite:PS00194PFscan:PS51352PANTHER:PTHR18929PANTHER:PTHR18929:SF121InterPro:Prot_disulphide_isomeraseSUPFAM:SSF52833
SignalP:SignalP-noTMTIGRFAMs:TIGR01126TIGRFAMs:TIGR01130TMHMM:TMhelixInterPro:Thioredoxin-like_sfInterPro:Thioredoxin_CS
InterPro:Thioredoxin_domainUniParc:UPI000233D45BSEG:seg:::
Description
hypothetical protein
Coordinates
chr12:+:4960025..4964029
Molecular Weight (calculated)
64280.5 Da
IEP (calculated)
4.453
GRAVY (calculated)
-0.295
Length
579 amino acids
Sequence
(BLAST)
001: MLSRKRLIVS LSLATLLLFS SLSLTLCDKI PPQNDNNNDD DEDLSFLEEP DDAAATSHHG HFPDPDRFDE DGDDDGDFGD FSGFDHSTEE AFEVDDKDVV
101: VLKERNFTTV VENNRFIMVE FYAPWCGHCQ ALAPEYAAAA TELKPDGVVL AKVDATVENE LANEYDVQGF PTVFFFVDGV HKPYTGQRTK DAIVTWIKKK
201: IGPGVSNITT VDDAERILTA ESKVVLGLLN SLVGTESDEL AAASKLEDDV NFYQTVVADV AKLFHIDPSV KRPALILLKK EEEKLNHFDG QFVKAEIADF
301: VTSNKLPLVT IFTRESAPVI FESQIKKQLL LFVTSNDTEK FVPVFKEAAK KFKGKLIFVH VELDNEDVGK PVADYFGITG NGPKVLAYTG NDDGRKFLLD
401: EELTVDTITA FGNDFLEEKL KPFLKSDPVP ESNDGDVKIV VGNNFDEIVL DESKDVLLEI YAPWCGHCQA LEPTYNKLAK HLRNIESIVI AKMDGTTNEH
501: PRAKSDGFPT LLFFPAGNKS SDPIPVDVDH TVKAFYKFLR KHASIPFQLQ KPTSTAKTGS ESSYVKESQS SSTDVKDEL
Best Arabidopsis Sequence Match ( AT5G60640.1 )
(BLAST)
001: MAFRVLLLFS LTALLIFSAV SPSFAASSSD DVDDEDLSFL EDLKEDDVPG ADSLSSSTGF DEFEGGEEED PDMYNDDDDE EGDFSDLGNP DSDPLPTPEI
101: DEKDVVVIKE RNFTDVIENN QYVLVEFYAP WCGHCQSLAP EYAAAATELK EDGVVLAKID ATEENELAQE YRVQGFPTLL FFVDGEHKPY TGGRTKETIV
201: TWVKKKIGPG VYNLTTLDDA EKVLTSGNKV VLGYLNSLVG VEHDQLNAAS KAEDDVNFYQ TVNPDVAKMF HLDPESKRPA LVLVKKEEEK ISHFDGEFVK
301: SALVSFVSAN KLALVSVFTR ETAPEIFESA IKKQLLLFVT KNESEKVLTE FQEAAKSFKG KLIFVSVDLD NEDYGKPVAE YFGVSGNGPK LIGYTGNEDP
401: KKYFFDGEIQ SDKIKIFGED FLNDKLKPFY KSDPIPEKND EDVKIVVGDN FDEIVLDDSK DVLLEVYAPW CGHCQALEPM YNKLAKHLRS IDSLVITKMD
501: GTTNEHPKAK AEGFPTILFF PAGNKTSEPI TVDTDRTVVA FYKFLRKHAT IPFKLEKPAS TESPKTAEST PKVETTETKE SPDSTTKSSQ SDSKDEL
Arabidopsis Description
PDIL1-4Protein disulfide-isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UQB2]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.