CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 10
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

nucleus: 21132161
extracellular: 25724908
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64644	Soybean	nucleus	95.83	91.81
KRH16370	Soybean	endoplasmic reticulum	76.74	77.82
KRH18702	Soybean	endoplasmic reticulum	75.75	76.97
KRH53258	Soybean	mitochondrion	58.25	74.37
VIT_18s0001g02510.t01	Wine grape	endoplasmic reticulum	71.57	72.14
Solyc06g060290.2.1	Tomato	plastid	61.03	70.09
PGSC0003DMT400045299	Potato	endoplasmic reticulum	68.39	69.22
KRH64647	Soybean	cytosol, mitochondrion	28.83	68.4
KRH69241	Soybean	endoplasmic reticulum	6.56	39.29
KRH22896	Soybean	endoplasmic reticulum	32.41	29.21
KRH24870	Soybean	endoplasmic reticulum	32.41	28.15
KRH31823	Soybean	endoplasmic reticulum	20.08	27.75
KRH29922	Soybean	endoplasmic reticulum	32.21	27.65
KRH26418	Soybean	endoplasmic reticulum	32.21	26.91
KRH68449	Soybean	endoplasmic reticulum	18.29	25.41
KRG96732	Soybean	endoplasmic reticulum	18.49	24.35
KRH69242	Soybean	cytosol	13.72	24.3
KRH23443	Soybean	endoplasmic reticulum	23.86	24.19
KRH09876	Soybean	endoplasmic reticulum	24.65	23.71
KRH34995	Soybean	endoplasmic reticulum	20.08	23.33
KRH10410	Soybean	endoplasmic reticulum	6.36	22.7
KRH22935	Soybean	endoplasmic reticulum	6.36	21.77
KRH73319	Soybean	endoplasmic reticulum	18.49	21.23
KRH14820	Soybean	endoplasmic reticulum	18.49	21.23
KRH54865	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	13.32	21.14

Protein Annotations

EntrezGene:100788687	Gene3D:3.40.30.10	MapMan:50.5.3	EMBL:ACUP02003456	ncoils:Coil	InterPro:Disulphide_isomerase
EnsemblPlantsGene:GLYMA_06G114800	GO:GO:0003674	GO:GO:0003756	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150
GO:GO:0009987	GO:GO:0016853	GO:GO:0019725	GO:GO:0034976	GO:GO:0045454	UniProt:I1KAB7
InterPro:IPR013766	EnsemblPlants:KRH53259	ProteinID:KRH53259	ProteinID:KRH53259.1	PFAM:PF00085	PFAM:PF13848
PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR18929	PANTHER:PTHR18929:SF186	InterPro:Prot_disulphide_isomerase
SUPFAM:SSF52833	SignalP:SignalP-noTM	TIGRFAMs:TIGR01126	TIGRFAMs:TIGR01130	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI00023C2559	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:9319023..9322977

Molecular Weight (calculated)

56117.9 Da

IEP (calculated)

4.619

GRAVY (calculated)

-0.346

Length

503 amino acids

Sequence
(BLAST)

001: MAGTVSTCFF FVFLLSLLLP FQISAEESSE KEFVLTLDHS NFHDTVSKHD FIVVEFYAPW CGHCKKLAPE YEKAASILSS HDPPIVLAKV DANEEKNKDL
101: ASQYDVKGFP TINILRNGGK NVQEYKGPRE ADGIVDYLKK QSGPASTEIK SADEATAFIG ENKVAIVGVF PKFSGEEFDN FSALAEKLRS DYDFGHTLNA
201: KLLPRGESSV SGPVVRLFKP FDELFVDFQD FNVEALEKFV EESSTPVVTV FNNEPSNHPF VVKFFNSPNA KAMLFINFTA EGAEAIKSKY REAAEQYKQQ
301: GVSFLVGDVE SSQGAFQYFG LKEEQVPLII IQHNDGKKFF KPNLEADHIP TWLKAYKDGH VAPFVKSEPI PETNDEPVKV VVGASLEDIV FKSGKNVLLE
401: FYAPWCGHCK QLAPILDEVA ISYQNEADVV IAKLDATAND IPSETFDVQG YPTVYFRSAS GKLSQYDGGR TKEDIIEFIE KNRDKPAQQE QGKDEQEQGK
501: DEL

Best Arabidopsis Sequence Match ( AT1G21750.1 )
(BLAST)

001: MAMRGFTLFS ILVLSLCASS IRSEETETKE FVLTLDHTNF TDTINKHDFI VVEFYAPWCG HCKQLAPEYE KAASALSSNV PPVVLAKIDA SEETNREFAT
101: QYEVQGFPTI KIFRNGGKAV QEYNGPREAE GIVTYLKKQS GPASAEIKSA DDASEVVSDK KVVVVGIFPK LSGSEFDSFM AIAEKLRSEL DFAHTSDAKL
201: LPRGESSVTG PVVRLFKPFD EQFVDSKDFD GEALEKFVKE SSIPLITVFD KDPNNHPYVI KFFESTNTKA MLFINFTGEG AESLKSKYRE VATSNKGQGL
301: SFLLGDAENS QGAFQYFGLE ESQVPLIIIQ TADDKKYLKT NVEVDQIESW VKDFKDGKIA PHKKSQPIPA ENNEPVKVVV SDSLDDIVLN SGKNVLLEFY
401: APWCGHCQKL APILDEVAVS YQSDSSVVIA KLDATANDFP KDTFDVKGFP TIYFKSASGN VVVYEGDRTK EDFISFVDKN KDTVGEPKKE EETTEEVKDE
501: L

Arabidopsis Description

PDIL1-1Protein disulfide isomerase-like 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI01]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.