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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 3
  • endoplasmic reticulum 8
  • extracellular 4
  • vacuole 4
  • plasma membrane 4
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:plastid, secretory
BaCelLo:plastid
ChloroP:plastid
EpiLoc:endoplasmic reticulum
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:endoplasmic reticulum
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH16370 Soybean endoplasmic reticulum 93.54 93.35
KRH53259 Soybean endoplasmic reticulum 76.97 75.75
KRH64644 Soybean nucleus 77.78 73.33
VIT_18s0001g02510.t01 Wine grape endoplasmic reticulum 72.53 71.94
Solyc06g060290.2.1 Tomato plastid 61.82 69.86
KRH53258 Soybean mitochondrion 54.55 68.53
PGSC0003DMT400045299 Potato endoplasmic reticulum 68.48 68.21
KRH64647 Soybean cytosol, mitochondrion 28.28 66.04
KRH69241 Soybean endoplasmic reticulum 6.46 38.1
KRH22896 Soybean endoplasmic reticulum 32.73 29.03
KRH29922 Soybean endoplasmic reticulum 31.92 26.96
KRH24870 Soybean endoplasmic reticulum 31.52 26.94
KRH26418 Soybean endoplasmic reticulum 32.73 26.91
KRH31823 Soybean endoplasmic reticulum 19.39 26.37
KRH68449 Soybean endoplasmic reticulum 18.59 25.41
KRH09876 Soybean endoplasmic reticulum 26.06 24.67
KRH23443 Soybean endoplasmic reticulum 24.65 24.6
KRG96732 Soybean endoplasmic reticulum 18.38 23.82
KRH69242 Soybean cytosol 13.13 22.89
KRH10410 Soybean endoplasmic reticulum 6.46 22.7
KRH73319 Soybean endoplasmic reticulum 19.39 21.92
KRH14820 Soybean endoplasmic reticulum 19.39 21.92
KRH22935 Soybean endoplasmic reticulum 6.46 21.77
KRH54865 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 12.73 19.87
KRH34995 Soybean endoplasmic reticulum 17.37 19.86
Protein Annotations
EntrezGene:100789569Gene3D:3.40.30.10MapMan:50.5.3EMBL:ACUP02008119InterPro:Disulphide_isomeraseEnsemblPlantsGene:GLYMA_13G077300
GO:GO:0003674GO:GO:0003756GO:GO:0003824GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0006457GO:GO:0006950GO:GO:0008150GO:GO:0009987
GO:GO:0016853GO:GO:0019725GO:GO:0034976GO:GO:0045454InterPro:IPR013766UniProt:K7LX68
EnsemblPlants:KRH18702ProteinID:KRH18702ProteinID:KRH18702.1PFAM:PF00085PFAM:PF13848PRINTS:PR00421
ScanProsite:PS00194PFscan:PS51352PANTHER:PTHR18929PANTHER:PTHR18929:SF186InterPro:Prot_disulphide_isomeraseSUPFAM:SSF52833
SignalP:SignalP-noTMTIGRFAMs:TIGR01126TIGRFAMs:TIGR01130TMHMM:TMhelixInterPro:Thioredoxin-like_sfInterPro:Thioredoxin_CS
InterPro:Thioredoxin_domainUniParc:UPI000233BDDASEG:seg:::
Description
hypothetical protein
Coordinates
chr13:+:18273603..18279038
Molecular Weight (calculated)
55702.8 Da
IEP (calculated)
5.173
GRAVY (calculated)
-0.314
Length
495 amino acids
Sequence
(BLAST)
001: MAHHNNIRVS ICFLFASSLL SLFAQISSGK EFVLTLNRSN FSDIVTKHNF VVVEFYAPWC GHCMKLAPEY EKAASILSSN DPPVILAKVD ANEEKNRELA
101: SQFQVQGFPT IKILRNGGKV VQDYKGPREA DGIVDYLKKQ SGPATTEIKS ADDASALIDK NKVVIVGVFP KFSGEEYENF NALADKLRSE YDFSHTLNAK
201: HLPRGESSVT GPVVRLFKPF DELFVDFYDF NMEALSKFVE ESSVPIVTVF NNDPSNHPFV VKFFDNPNVK AMMFFNFTVD NADSLKSKFR ESAEQYRQQG
301: ISFLVGDLEA SQGAFQYFGL KENQVPLIVI QHNDGKKFLK TNVEPDHIAT WLKAYKDGSV EPFKKSEPIP EVNNESVKVV VADNLQDIVF NSGKNVLLEI
401: YAPWCSHCKK LAPILEEVAV SYQSNPDVII AKLDATANDI PRDTFDVQGY PTVYFRSASG QISQYDGSRK KEDIIDFIEK NRDKVDQQES VKDEL
Best Arabidopsis Sequence Match ( AT1G21750.1 )
(BLAST)
001: MAMRGFTLFS ILVLSLCASS IRSEETETKE FVLTLDHTNF TDTINKHDFI VVEFYAPWCG HCKQLAPEYE KAASALSSNV PPVVLAKIDA SEETNREFAT
101: QYEVQGFPTI KIFRNGGKAV QEYNGPREAE GIVTYLKKQS GPASAEIKSA DDASEVVSDK KVVVVGIFPK LSGSEFDSFM AIAEKLRSEL DFAHTSDAKL
201: LPRGESSVTG PVVRLFKPFD EQFVDSKDFD GEALEKFVKE SSIPLITVFD KDPNNHPYVI KFFESTNTKA MLFINFTGEG AESLKSKYRE VATSNKGQGL
301: SFLLGDAENS QGAFQYFGLE ESQVPLIIIQ TADDKKYLKT NVEVDQIESW VKDFKDGKIA PHKKSQPIPA ENNEPVKVVV SDSLDDIVLN SGKNVLLEFY
401: APWCGHCQKL APILDEVAVS YQSDSSVVIA KLDATANDFP KDTFDVKGFP TIYFKSASGN VVVYEGDRTK EDFISFVDKN KDTVGEPKKE EETTEEVKDE
501: L
Arabidopsis Description
PDIL1-1Protein disulfide isomerase-like 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI01]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.