CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

mitochondrion: 25806999
endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 25806999 doi

AH Kamal, S Komatsu

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69242	Soybean	cytosol	87.38	97.54
KRH31823	Soybean	endoplasmic reticulum	83.28	72.53
GSMUA_Achr2P02130_001	Banana	endoplasmic reticulum	70.03	61.33
Solyc01g100320.2.1	Tomato	extracellular	69.4	61.28
GSMUA_Achr11P...	Banana	endoplasmic reticulum	69.72	61.05
KRH68449	Soybean	endoplasmic reticulum	69.09	60.5
PGSC0003DMT400007185	Potato	endoplasmic reticulum	68.45	60.45
CDX95413	Canola	cytosol	45.43	60.25
AT2G47470.1	Thale cress	endoplasmic reticulum	67.51	59.28
CDX95726	Canola	endoplasmic reticulum	67.51	59.12
Bra000454.1-P	Field mustard	endoplasmic reticulum	66.88	58.56
CDX83326	Canola	endoplasmic reticulum	66.56	58.29
Zm00001d040766_P001	Maize	plasma membrane	66.56	57.49
CDY57723	Canola	endoplasmic reticulum	64.98	57.06
Bra004455.1-P	Field mustard	endoplasmic reticulum	64.67	56.79
CDX80106	Canola	endoplasmic reticulum	64.67	56.79
EES00714	Sorghum	endoplasmic reticulum	65.62	56.52
TraesCS1A01G097700.1	Wheat	golgi	64.98	56.13
TraesCS1B01G126100.1	Wheat	endoplasmic reticulum	64.98	56.13
TraesCS1D01G106500.1	Wheat	endoplasmic reticulum	64.98	56.13
Os05t0156300-01	Rice	plasma membrane	64.35	55.59
EES19066	Sorghum	endoplasmic reticulum	63.09	54.5
Os01t0339900-01	Rice	plasma membrane	63.09	53.91
KRG96732	Soybean	endoplasmic reticulum	64.04	53.14
Zm00001d037590_P002	Maize	endoplasmic reticulum	63.09	52.91
HORVU1Hr1G022810.1	Barley	endoplasmic reticulum	65.62	51.61
Zm00001d009651_P001	Maize	endoplasmic reticulum	31.86	49.51
Zm00001d015747_P022	Maize	plastid	45.11	41.69
Zm00001d024894_P016	Maize	plastid	45.11	41.69
KRH14820	Soybean	endoplasmic reticulum	25.55	18.49
KRH73319	Soybean	endoplasmic reticulum	25.55	18.49
KRH10410	Soybean	endoplasmic reticulum	7.89	17.73
KRH22935	Soybean	endoplasmic reticulum	7.57	16.33
KRH53259	Soybean	endoplasmic reticulum	21.14	13.32
KRH64644	Soybean	nucleus	21.45	12.95
KRH64647	Soybean	cytosol, mitochondrion	8.52	12.74
KRH18702	Soybean	endoplasmic reticulum	19.87	12.73
KRH53258	Soybean	mitochondrion	15.46	12.44
KRH22896	Soybean	endoplasmic reticulum	21.77	12.37
KRH16370	Soybean	endoplasmic reticulum	19.24	12.3
KRH29922	Soybean	endoplasmic reticulum	22.71	12.29
KRH24870	Soybean	endoplasmic reticulum	22.08	12.09
KRH26418	Soybean	endoplasmic reticulum	21.45	11.3
KRH34995	Soybean	endoplasmic reticulum	13.56	9.93
KRH23443	Soybean	endoplasmic reticulum	15.14	9.68
KRH09876	Soybean	endoplasmic reticulum	15.14	9.18
KRH69241	Soybean	endoplasmic reticulum	0.0	0.0

Protein Annotations

Gene3D:1.20.1150.12	Gene3D:3.40.30.10	MapMan:35.1	UniProt:A0A0R0JK73	EMBL:ACUP02003588	InterPro:ERp29_C
InterPro:ERp29_C_sf	EnsemblPlantsGene:GLYMA_06G215100	GO:GO:0003674	GO:GO:0003756	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006457	GO:GO:0006950
GO:GO:0008150	GO:GO:0009987	GO:GO:0016853	GO:GO:0019725	GO:GO:0034976	GO:GO:0045454
InterPro:IPR013766	InterPro:IPR036356	EnsemblPlants:KRH54865	ProteinID:KRH54865	ProteinID:KRH54865.1	PFAM:PF00085
PFAM:PF07749	PRINTS:PR00421	PFscan:PS51352	PANTHER:PTHR18929	PANTHER:PTHR18929:SF187	SUPFAM:SSF47933
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0006ED9B9E	:	:

Description

hypothetical protein

Coordinates

chr6:-:22189377..22199923

Molecular Weight (calculated)

35365.0 Da

IEP (calculated)

6.180

GRAVY (calculated)

-0.374

Length

317 amino acids

Sequence
(BLAST)

001: MAVDCDEHKS LCSKYGVSGY PTIQWFPKGS LEPKKYEGPR TADSLAEFVN TEGGTNVKIA TAPSNVVVLT SENFNEVVLD ETKDVLVEFY APWCGHCKSL
101: APISISLRIS CYHFKVRVVN FCKTNNVKPD YALFFLQTYE KVVTAFKLEE DVVIANLDAD KYKDLAEKYD VSGFPTLKFF PKGNKAGEEY GGGRDLDDFV
201: AFINEKSGTS RDVKGQLTSQ AGIVESLDVL VKEFVAASDE EKKSMFTRME EEVEKLKGSA SRHGKIYLKA AKNYLEKGSD YAKNEIQRLQ RILDKSISPA
301: KADELTLKKN ILSTYAA

Best Arabidopsis Sequence Match ( AT2G47470.1 )
(BLAST)

001: MAKSQIWFGF ALLALLLVSA VADDVVVLTD DSFEKEVGKD KGALVEFYAP WCGHCKKLAP EYEKLGASFK KAKSVLIAKV DCDEQKSVCT KYGVSGYPTI
101: QWFPKGSLEP QKYEGPRNAE ALAEYVNKEG GTNVKLAAVP QNVVVLTPDN FDEIVLDQNK DVLVEFYAPW CGHCKSLAPT YEKVATVFKQ EEGVVIANLD
201: ADAHKALGEK YGVSGFPTLK FFPKDNKAGH DYDGGRDLDD FVSFINEKSG TSRDSKGQLT SKAGIVESLD ALVKELVAAS EDEKKAVLSR IEEEASTLKG
301: STTRYGKLYL KLAKSYIEKG SDYASKETER LGRVLGKSIS PVKADELTLK RNILTTFVAS S

Arabidopsis Description

PDIL2-1UNE5 [Source:UniProtKB/TrEMBL;Acc:A0A178W1F8]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.