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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 7
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • plastid 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:cytosol, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:endoplasmic reticulum
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH09876 Soybean endoplasmic reticulum 93.15 88.34
VIT_09s0002g04250.t01 Wine grape endoplasmic reticulum 66.33 61.27
PGSC0003DMT400006756 Potato endoplasmic reticulum 65.32 60.22
Solyc03g120720.2.1 Tomato plastid 64.92 59.85
Bra014319.1-P Field mustard endoplasmic reticulum 46.57 55.93
AT3G16110.1 Thale cress endoplasmic reticulum 60.08 55.81
CDY68572 Canola endoplasmic reticulum 58.06 54.96
CDY02550 Canola endoplasmic reticulum 58.27 54.94
CDY47529 Canola endoplasmic reticulum 58.27 54.94
GSMUA_Achr10P... Banana endoplasmic reticulum 59.27 54.44
AT1G52260.1 Thale cress endoplasmic reticulum 58.87 54.38
CDY52981 Canola endoplasmic reticulum 57.86 54.25
Bra018958.1-P Field mustard endoplasmic reticulum 57.66 54.06
Zm00001d045218_P002 Maize endoplasmic reticulum 53.43 50.09
Os06t0163400-01 Rice plasma membrane 52.42 48.78
TraesCS7A01G123900.1 Wheat endoplasmic reticulum 53.02 48.61
TraesCS7D01G121800.1 Wheat endoplasmic reticulum 52.82 48.16
EER87912 Sorghum endoplasmic reticulum 52.82 48.07
TraesCS7B01G022800.1 Wheat endoplasmic reticulum 53.23 47.57
HORVU7Hr1G026030.1 Barley cytosol 42.14 35.67
KRH22896 Soybean endoplasmic reticulum 32.86 29.21
KRH29922 Soybean endoplasmic reticulum 32.46 27.47
KRH24870 Soybean endoplasmic reticulum 32.06 27.46
KRH26418 Soybean endoplasmic reticulum 32.86 27.08
KRH18702 Soybean endoplasmic reticulum 24.6 24.65
KRH16370 Soybean endoplasmic reticulum 24.4 24.4
KRH53259 Soybean endoplasmic reticulum 24.19 23.86
KRH64644 Soybean nucleus 23.39 22.1
KRH53258 Soybean mitochondrion 17.14 21.57
KRH69241 Soybean endoplasmic reticulum 3.63 21.43
KRH68449 Soybean endoplasmic reticulum 14.52 19.89
KRH64647 Soybean cytosol, mitochondrion 8.06 18.87
KRH34995 Soybean endoplasmic reticulum 16.13 18.48
KRH31823 Soybean endoplasmic reticulum 13.51 18.41
KRG96732 Soybean endoplasmic reticulum 13.51 17.54
KRH69242 Soybean cytosol 9.88 17.25
KRH14820 Soybean endoplasmic reticulum 14.31 16.21
KRH73319 Soybean endoplasmic reticulum 13.91 15.75
KRH54865 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 9.68 15.14
KRH10410 Soybean endoplasmic reticulum 4.03 14.18
KRH22935 Soybean endoplasmic reticulum 4.03 13.61
Protein Annotations
EntrezGene:100305460Gene3D:3.40.30.10MapMan:50.5.3EMBL:ACUP02008465ncoils:CoilEnsemblPlantsGene:GLYMA_13G357700
GO:GO:0003674GO:GO:0003756GO:GO:0003824GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0006457GO:GO:0006950GO:GO:0008150GO:GO:0009987
GO:GO:0016853GO:GO:0019725GO:GO:0034976GO:GO:0045454UniProt:I1M5K0InterPro:IPR013766
EnsemblPlants:KRH23443ProteinID:KRH23443ProteinID:KRH23443.1PFAM:PF00085PFAM:PF13848PFscan:PS51352
PANTHER:PTHR18929PANTHER:PTHR18929:SF121SUPFAM:SSF52833SignalP:SignalP-noTMInterPro:Thioredoxin-like_sfInterPro:Thioredoxin_domain
UniParc:UPI00023CF752SEG:seg::::
Description
hypothetical protein
Coordinates
chr13:+:44545582..44550666
Molecular Weight (calculated)
55979.2 Da
IEP (calculated)
4.869
GRAVY (calculated)
-0.165
Length
496 amino acids
Sequence
(BLAST)
001: MKPTLRFIVF LLTLLLVLRF NVATEVKDEL EELLAVDEEV EREAEKGGEK LSEAEVLSKA QRIVIELKNE NTERVVNGNE FVLVLGYAPW CPRSAELMPH
101: FAEAATSLKE LGSPLIMAKL DADRYPKPAS FLGVKGFPTL LLFVNGTSQP YSGGFTADDI VIWAQKKTST PVIRISSVAE AEKFLTKYQT FLIGRFENFE
201: GPDYEEFVSA AKSDNEIQFV ETSQVELAQV LYPDIKPTDR FLGIVKSEPE RYSAYDGAFI LNKILEFVDY NKFPLVTKLT EMNSVRVYSS PIKLQVLVFA
301: NIDDFKNLLD TLQDVAKTFK SKIMFIYVDI NDENLAKPFL TLFGLEESKN TVEFCNNLMQ GSLSPYFKSQ PIPDNTEASV RAIVGKTFDD EILSSKKDVL
401: LEVFTPWCMN CEATSKQVEK LAKHYKGSSN LIFARTDASA NEHPKLQVND YPTLLFYRAD DKANPIKLST KSSLKELAAS INKYLKVKNQ VLKDEL
Best Arabidopsis Sequence Match ( AT3G16110.1 )
(BLAST)
001: MLTKPKPNSK FSILFTFLLL LSFLIFVARS SDVAVEAGSE EELDDLEQLL AVDEQLQEER PEQQSEAETV SKAQRIVVEL NGDNTKRLID GNEYVMVLGY
101: APWCARSAEL MPRFAEAATD LKEIGSSVLM AKIDGERYSK VASQLEIKGF PTLLLFVNGT SQSYTGGFSS EEIVIWVQKK TGASTIKLDT VDEASGFLKK
201: HHTFILGLFE KSEDSSGHDE FVKAASLDNE IQFVETSSID VAKLLFPNLK TNNVFVGLVK TEAEKYTSYD GPCQAEKIVE FLNSNKFPLV TKLTESNTVR
301: VYSSPVKLQV MVFSKTDDFE SLAQPLEDIA RKFKSKLMLI YIDISNENLA MPFLTLFGIE DAKKTVVAAF DNNLNSKYLL ESDPSPSNIE EFCFGLAHGT
401: VSAYYKSQPI PDNQNASVVA VVGRTFDEVV LRSSENVLLE VHTPWCINCE ALSKQVEKLS QHFKGFENLV FARIDASANE HPKLTVDDYP TILLYKTGEK
501: ENPLKLSTKS SAKDMAVLIN KELKWKDQSG KDEL
Arabidopsis Description
PDIL1-6PDIL1-6 [Source:UniProtKB/TrEMBL;Acc:A0A178VNL8]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.