Factsheet for VIT_09s0002g04250.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 8
vacuole 5
plasma membrane 5
golgi 5
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09876	Soybean	endoplasmic reticulum	66.11	67.88
PGSC0003DMT400006756	Potato	endoplasmic reticulum	67.04	66.91
Solyc03g120720.2.1	Tomato	plastid	66.67	66.54
KRH23443	Soybean	endoplasmic reticulum	61.27	66.33
GSMUA_Achr10P...	Banana	endoplasmic reticulum	61.45	61.11
AT3G16110.1	Thale cress	endoplasmic reticulum	60.34	60.67
CDY47529	Canola	endoplasmic reticulum	58.47	59.7
CDY68572	Canola	endoplasmic reticulum	57.91	59.35
CDY02550	Canola	endoplasmic reticulum	57.73	58.94
AT1G52260.1	Thale cress	endoplasmic reticulum	58.47	58.47
CDY52981	Canola	endoplasmic reticulum	57.36	58.22
Bra018958.1-P	Field mustard	endoplasmic reticulum	57.17	58.03
Bra014319.1-P	Field mustard	endoplasmic reticulum	43.2	56.17
Os06t0163400-01	Rice	plasma membrane	52.7	53.1
Zm00001d045218_P002	Maize	endoplasmic reticulum	51.58	52.36
TraesCS7D01G121800.1	Wheat	endoplasmic reticulum	52.89	52.21
TraesCS7A01G123900.1	Wheat	endoplasmic reticulum	52.14	51.76
TraesCS7B01G022800.1	Wheat	endoplasmic reticulum	52.89	51.17
EER87912	Sorghum	endoplasmic reticulum	51.77	51.01
HORVU7Hr1G026030.1	Barley	cytosol	42.83	39.25
VIT_06s0004g02890.t01	Wine grape	endoplasmic reticulum	31.47	29.29
VIT_13s0019g04240.t01	Wine grape	endoplasmic reticulum	29.8	28.52
VIT_18s0001g02510.t01	Wine grape	endoplasmic reticulum	24.39	26.25
VIT_07s0031g02660.t01	Wine grape	endoplasmic reticulum	21.04	22.6
VIT_18s0075g00210.t01	Wine grape	endoplasmic reticulum	13.59	18.43
VIT_06s0004g03250.t01	Wine grape	endoplasmic reticulum	4.84	17.57
VIT_12s0059g01560.t01	Wine grape	endoplasmic reticulum	12.29	15.24

Protein Annotations

EntrezGene:100265209	wikigene:100265209	Gene3D:3.40.30.10	MapMan:50.5.3	ProteinID:CBI36120	ProteinID:CBI36120.3
UniProt:D7U0H4	EMBL:FN596494	GO:GO:0003674	GO:GO:0003756	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006457	GO:GO:0006950
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0034976	GO:GO:0045454	InterPro:IPR013766
EntrezGene:LOC100265209	wikigene:LOC100265209	PFAM:PF00085	PFAM:PF13848	PFscan:PS51352	PANTHER:PTHR18929
PANTHER:PTHR18929:SF121	SUPFAM:SSF52833	SignalP:SignalP-noTM	TMHMM:TMhelix	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain
UniParc:UPI00015C888C	ArrayExpress:VIT_09s0002g04250	EnsemblPlantsGene:VIT_09s0002g04250	EnsemblPlants:VIT_09s0002g04250.t01	RefSeq:XP_002279221	RefSeq:XP_002279221.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:-:3887442..3896617

Molecular Weight (calculated)

60202.9 Da

IEP (calculated)

4.722

GRAVY (calculated)

-0.134

Length

537 amino acids

Sequence
(BLAST)

001: MFAAKPTSRF VYLTVTLLLL LSFFVSITAY ETSDGNGDGE DEFEGIEELI ALDEEEESQQ NQGSHVKSTE AEVIVKAQRI VLELNSDNTK RIIDGNEYVL
101: VLGYAPWCPR SAELMPQFAE AATSLKELGS PLLMSKLDAE RHPKTASSLG ISGFPTLLLF TNGTSQPYTG GFSSEEIVIW VRKKTGVPVI RINSVTEAEE
201: FLKKHHTFAI GLFKKFVGCE YEEFVKAATS HNEIQFVEVN DIEVAKVLFP NIKPNSLFLG LVKSEMERYT TYEGTFEMDQ ILDFLDYNKF PLVTILTELN
301: SIKVYSSPVK FQVFVFAKAD AFKNLLKLLQ DVARKFVSKI MIVYVDITED NLAKPFLTLF GLEDSEDTIV TAFDNKISSK YLLESDPTPS KIEEFCSGLL
401: QGTLSPHFRS QAIPDNKEES VQIVVGKTFD NLVLSGDKNV LLEVYSPWCI DCETTSKQMK KLAKHFKGLD NLIFARIDAS ANEHPKLKVD DYPTLLFYKA
501: DDKSNPIKLS TKSSSKDLAA FINKNIGVQD QVSKDEL

Best Arabidopsis Sequence Match ( AT3G16110.1 )
(BLAST)

001: MLTKPKPNSK FSILFTFLLL LSFLIFVARS SDVAVEAGSE EELDDLEQLL AVDEQLQEER PEQQSEAETV SKAQRIVVEL NGDNTKRLID GNEYVMVLGY
101: APWCARSAEL MPRFAEAATD LKEIGSSVLM AKIDGERYSK VASQLEIKGF PTLLLFVNGT SQSYTGGFSS EEIVIWVQKK TGASTIKLDT VDEASGFLKK
201: HHTFILGLFE KSEDSSGHDE FVKAASLDNE IQFVETSSID VAKLLFPNLK TNNVFVGLVK TEAEKYTSYD GPCQAEKIVE FLNSNKFPLV TKLTESNTVR
301: VYSSPVKLQV MVFSKTDDFE SLAQPLEDIA RKFKSKLMLI YIDISNENLA MPFLTLFGIE DAKKTVVAAF DNNLNSKYLL ESDPSPSNIE EFCFGLAHGT
401: VSAYYKSQPI PDNQNASVVA VVGRTFDEVV LRSSENVLLE VHTPWCINCE ALSKQVEKLS QHFKGFENLV FARIDASANE HPKLTVDDYP TILLYKTGEK
501: ENPLKLSTKS SAKDMAVLIN KELKWKDQSG KDEL

Arabidopsis Description

PDIL1-6PDIL1-6 [Source:UniProtKB/TrEMBL;Acc:A0A178VNL8]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.