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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 8
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • plastid 1
  • nucleus 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, peroxisome, plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus, plastid
Predotar:secretory
PProwler:secretory
PTS1:peroxisome
TargetP:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:endoplasmic reticulum
plasma membrane: 27800704
plastid: 27992503
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d045218_P002 Maize endoplasmic reticulum 81.24 81.85
TraesCS7D01G121800.1 Wheat endoplasmic reticulum 82.55 80.88
TraesCS7A01G123900.1 Wheat endoplasmic reticulum 81.24 80.04
TraesCS7B01G022800.1 Wheat endoplasmic reticulum 82.74 79.46
EER87912 Sorghum endoplasmic reticulum 81.24 79.45
GSMUA_Achr10P... Banana endoplasmic reticulum 60.41 59.63
HORVU7Hr1G026030.1 Barley cytosol 64.17 58.36
VIT_09s0002g04250.t01 Wine grape endoplasmic reticulum 53.1 52.7
KRH23443 Soybean endoplasmic reticulum 48.78 52.42
KRH09876 Soybean endoplasmic reticulum 50.66 51.63
PGSC0003DMT400006756 Potato endoplasmic reticulum 50.66 50.19
Bra018958.1-P Field mustard endoplasmic reticulum 49.53 49.91
CDY52981 Canola endoplasmic reticulum 49.34 49.72
Solyc03g120720.2.1 Tomato plastid 49.91 49.44
CDY47529 Canola endoplasmic reticulum 48.41 49.05
CDY02550 Canola endoplasmic reticulum 48.41 49.05
CDY68572 Canola endoplasmic reticulum 48.22 49.05
AT1G52260.1 Thale cress endoplasmic reticulum 47.65 47.3
AT3G16110.1 Thale cress endoplasmic reticulum 47.28 47.19
Bra014319.1-P Field mustard endoplasmic reticulum 36.02 46.49
Os02t0100100-01 Rice plasma membrane 29.27 27.71
Os04t0436300-01 Rice endoplasmic reticulum 12.95 23.55
Os11t0199200-01 Rice extracellular, plasma membrane 21.76 22.66
Os02t0554900-01 Rice plastid 22.33 21.83
Os02t0550300-00 Rice endoplasmic reticulum 14.63 18.4
Os05t0156300-01 Rice plasma membrane 12.2 17.71
Os04t0432500-01 Rice plasma membrane 13.7 17.26
Os01t0339900-01 Rice plasma membrane 12.01 17.25
Os09t0451500-02 Rice plasma membrane 14.07 17.01
Os03t0287900-01 Rice endoplasmic reticulum 4.5 16.33
Protein Annotations
Gene3D:3.40.30.10EntrezGene:4340223MapMan:50.5.3EMBL:AK073970ProteinID:BAD67648.1ProteinID:BAF18810.1
ProteinID:BAS96309.1GO:GO:0003674GO:GO:0003756GO:GO:0003824GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005788GO:GO:0006457GO:GO:0006950
GO:GO:0008150GO:GO:0009987GO:GO:0016853GO:GO:0019725GO:GO:0034976GO:GO:0045454
InterPro:IPR013766EnsemblPlantsGene:Os06g0163400EnsemblPlants:Os06t0163400-01PFAM:PF00085PFAM:PF13848PFscan:PS51352
PANTHER:PTHR18929PANTHER:PTHR18929:SF121UniProt:Q5WA72SUPFAM:SSF52833SignalP:SignalP-noTMTMHMM:TMhelix
InterPro:Thioredoxin-like_sfInterPro:Thioredoxin_domainUniParc:UPI0000457949RefSeq:XP_015642967.1SEG:seg:
Description
PROTEIN DISULFIDE ISOMERASE-LIKE 1;5, PROTEIN DISULFIDE ISOMERASE-LIKE 1-5, PDI-like protein 1-5Thioredoxin domain 2 containing protein. (Os06t0163400-01)
Coordinates
chr6:+:3199376..3203918
Molecular Weight (calculated)
59035.4 Da
IEP (calculated)
4.592
GRAVY (calculated)
-0.192
Length
533 amino acids
Sequence
(BLAST)
001: MRARRVVAAA AVLLLFAVVA VARLDLDDDG DDSEVLDELL AVDEEEERGE LGGGGEAAAA EAVRRAQSMV LVLDNDNARR AVEENAEVLL LGYAPWCERS
101: AQLMPRFAEA AAALRAMGSA VAFAKLDGER YPKAASAVGV KGFPTVLLFV NGTEHQFTGL HTKDAIVTWV RKKTGAPASR IQSKDSAEEF LKKDQTFAVG
201: LFKNFEGAEY EEFVKAATSE NEVQFVETND RNVAKILFPG IASEEQFLGL VKSEPEKFEK FNGAFEEKEI IQFVELNKFP LITVFTDLNS GKVYGSPIKL
301: QVFTFAEAYD FEDLESMIQE VARGFKTKIM LIYVDTAEEK LAKPFLTLYG LEPEKPTVTA FDTSKGTKYL MEAEINAKNL QDFCLSLLEG TLPPYFRSEP
401: VPEEKGPIEK VVGRTFDSSV LESPQNVFLE VHAPWCVDCE AISKNVEKLA KHFNDLGQTN LKFARIDASV NEHPKLQINN YPTLLLYPAQ DKSNPIKLSK
501: KSNLKDMAKF VKEKLQIADV ETVAAGDIVK DEL
Best Arabidopsis Sequence Match ( AT3G16110.1 )
(BLAST)
001: MLTKPKPNSK FSILFTFLLL LSFLIFVARS SDVAVEAGSE EELDDLEQLL AVDEQLQEER PEQQSEAETV SKAQRIVVEL NGDNTKRLID GNEYVMVLGY
101: APWCARSAEL MPRFAEAATD LKEIGSSVLM AKIDGERYSK VASQLEIKGF PTLLLFVNGT SQSYTGGFSS EEIVIWVQKK TGASTIKLDT VDEASGFLKK
201: HHTFILGLFE KSEDSSGHDE FVKAASLDNE IQFVETSSID VAKLLFPNLK TNNVFVGLVK TEAEKYTSYD GPCQAEKIVE FLNSNKFPLV TKLTESNTVR
301: VYSSPVKLQV MVFSKTDDFE SLAQPLEDIA RKFKSKLMLI YIDISNENLA MPFLTLFGIE DAKKTVVAAF DNNLNSKYLL ESDPSPSNIE EFCFGLAHGT
401: VSAYYKSQPI PDNQNASVVA VVGRTFDEVV LRSSENVLLE VHTPWCINCE ALSKQVEKLS QHFKGFENLV FARIDASANE HPKLTVDDYP TILLYKTGEK
501: ENPLKLSTKS SAKDMAVLIN KELKWKDQSG KDEL
Arabidopsis Description
PDIL1-6PDIL1-6 [Source:UniProtKB/TrEMBL;Acc:A0A178VNL8]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.