Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH23443 | Soybean | endoplasmic reticulum | 88.34 | 93.15 |
VIT_09s0002g04250.t01 | Wine grape | endoplasmic reticulum | 67.88 | 66.11 |
PGSC0003DMT400006756 | Potato | endoplasmic reticulum | 64.82 | 63.01 |
Solyc03g120720.2.1 | Tomato | plastid | 64.44 | 62.64 |
AT3G16110.1 | Thale cress | endoplasmic reticulum | 60.42 | 59.18 |
CDY68572 | Canola | endoplasmic reticulum | 58.7 | 58.59 |
CDY47529 | Canola | endoplasmic reticulum | 58.7 | 58.37 |
CDY52981 | Canola | endoplasmic reticulum | 58.51 | 57.84 |
CDY02550 | Canola | endoplasmic reticulum | 58.13 | 57.79 |
Bra018958.1-P | Field mustard | endoplasmic reticulum | 58.32 | 57.66 |
GSMUA_Achr10P... | Banana | endoplasmic reticulum | 59.46 | 57.59 |
AT1G52260.1 | Thale cress | endoplasmic reticulum | 58.89 | 57.36 |
Bra014319.1-P | Field mustard | endoplasmic reticulum | 44.55 | 56.42 |
Zm00001d045218_P002 | Maize | endoplasmic reticulum | 52.2 | 51.61 |
Os06t0163400-01 | Rice | plasma membrane | 51.63 | 50.66 |
TraesCS7A01G123900.1 | Wheat | endoplasmic reticulum | 52.2 | 50.46 |
TraesCS7D01G121800.1 | Wheat | endoplasmic reticulum | 52.2 | 50.18 |
TraesCS7B01G022800.1 | Wheat | endoplasmic reticulum | 52.58 | 49.55 |
EER87912 | Sorghum | endoplasmic reticulum | 51.63 | 49.54 |
HORVU7Hr1G026030.1 | Barley | cytosol | 42.06 | 37.54 |
KRH22896 | Soybean | endoplasmic reticulum | 31.74 | 29.75 |
KRH29922 | Soybean | endoplasmic reticulum | 31.55 | 28.16 |
KRH24870 | Soybean | endoplasmic reticulum | 31.17 | 28.15 |
KRH26418 | Soybean | endoplasmic reticulum | 31.17 | 27.08 |
KRH18702 | Soybean | endoplasmic reticulum | 24.67 | 26.06 |
KRH16370 | Soybean | endoplasmic reticulum | 24.28 | 25.6 |
KRH69241 | Soybean | endoplasmic reticulum | 4.02 | 25.0 |
KRH53259 | Soybean | endoplasmic reticulum | 23.71 | 24.65 |
KRH53258 | Soybean | mitochondrion | 17.4 | 23.1 |
KRH64644 | Soybean | nucleus | 23.14 | 23.05 |
KRH64647 | Soybean | cytosol, mitochondrion | 8.6 | 21.23 |
KRH68449 | Soybean | endoplasmic reticulum | 13.58 | 19.61 |
KRH31823 | Soybean | endoplasmic reticulum | 13.38 | 19.23 |
KRH34995 | Soybean | endoplasmic reticulum | 15.3 | 18.48 |
KRG96732 | Soybean | endoplasmic reticulum | 12.81 | 17.54 |
KRH69242 | Soybean | cytosol | 9.37 | 17.25 |
KRH10410 | Soybean | endoplasmic reticulum | 4.4 | 16.31 |
KRH14820 | Soybean | endoplasmic reticulum | 13.19 | 15.75 |
KRH22935 | Soybean | endoplasmic reticulum | 4.4 | 15.65 |
KRH73319 | Soybean | endoplasmic reticulum | 13.0 | 15.53 |
KRH54865 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 9.18 | 15.14 |
Protein Annotations
Gene3D:3.40.30.10 | MapMan:50.5.3 | EMBL:ACUP02009113 | ProteinID:BAH89252.1 | UniProt:C6KXH6 | ncoils:Coil |
EnsemblPlantsGene:GLYMA_15G015700 | GO:GO:0003674 | GO:GO:0003756 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0006457 | GO:GO:0006950 | GO:GO:0008150 |
GO:GO:0009987 | GO:GO:0016853 | GO:GO:0019725 | GO:GO:0034976 | GO:GO:0045454 | InterPro:IPR013766 |
EnsemblPlants:KRH09876 | ProteinID:KRH09876 | ProteinID:KRH09876.1 | PFAM:PF00085 | PFAM:PF13848 | PFscan:PS51352 |
PANTHER:PTHR18929 | PANTHER:PTHR18929:SF121 | SUPFAM:SSF52833 | SignalP:SignalP-noTM | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_domain |
UniParc:UPI0001B04E7E | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr15:-:1244525..1249605
Molecular Weight (calculated)
58807.3 Da
IEP (calculated)
4.605
GRAVY (calculated)
-0.154
Length
523 amino acids
Sequence
(BLAST)
(BLAST)
001: MCTMKPTLRF ILVLLTLLLV LRFNVASEVE DELEELLAVD EEVEQEAEKG GEKLSEAEVL SKAQRIVIEL NNDNTERVVN GNEFVLVLGY APWCPRSAEL
101: MPHFAEAATS LKELGSPLVL AKLDADRYSK PASFLGVKGF PTLLLFVNGT SQPYSGGFAA DDIVIWAQKK TSTPVIRIGS VTEAEKFLRK YQTFLIGRFD
201: KFEGPDYEEF VSAAQSDNEI QFVETNQVEL AQVLYPDIKP TDQFLGIVKS EPERYTAYDG AFTMNKILEF VDYNKFPLVT KLTEMNSIRV YSSPIKLQVL
301: VFANIDDFKN LLETLQDVAK TFKSKIMFIY VDINDENLAK PFLTLFGLEE SKNTVVAAFD NAMSSKYLLE TKPTQSNIEE FCNNLVQGSL SPYFKSQPIP
401: DNTESSVHVI VGKTFDDEIL SSEKDVLLEV FTPWCINCEA TSKQVEKLAK HYKGSSNLIF ARIDASANEH PKLQVNDYPT LLLYRADDKA NPIKLSTKSS
501: LKELAASINK YVKVKNQVVK DEL
101: MPHFAEAATS LKELGSPLVL AKLDADRYSK PASFLGVKGF PTLLLFVNGT SQPYSGGFAA DDIVIWAQKK TSTPVIRIGS VTEAEKFLRK YQTFLIGRFD
201: KFEGPDYEEF VSAAQSDNEI QFVETNQVEL AQVLYPDIKP TDQFLGIVKS EPERYTAYDG AFTMNKILEF VDYNKFPLVT KLTEMNSIRV YSSPIKLQVL
301: VFANIDDFKN LLETLQDVAK TFKSKIMFIY VDINDENLAK PFLTLFGLEE SKNTVVAAFD NAMSSKYLLE TKPTQSNIEE FCNNLVQGSL SPYFKSQPIP
401: DNTESSVHVI VGKTFDDEIL SSEKDVLLEV FTPWCINCEA TSKQVEKLAK HYKGSSNLIF ARIDASANEH PKLQVNDYPT LLLYRADDKA NPIKLSTKSS
501: LKELAASINK YVKVKNQVVK DEL
001: MLTKPKPNSK FSILFTFLLL LSFLIFVARS SDVAVEAGSE EELDDLEQLL AVDEQLQEER PEQQSEAETV SKAQRIVVEL NGDNTKRLID GNEYVMVLGY
101: APWCARSAEL MPRFAEAATD LKEIGSSVLM AKIDGERYSK VASQLEIKGF PTLLLFVNGT SQSYTGGFSS EEIVIWVQKK TGASTIKLDT VDEASGFLKK
201: HHTFILGLFE KSEDSSGHDE FVKAASLDNE IQFVETSSID VAKLLFPNLK TNNVFVGLVK TEAEKYTSYD GPCQAEKIVE FLNSNKFPLV TKLTESNTVR
301: VYSSPVKLQV MVFSKTDDFE SLAQPLEDIA RKFKSKLMLI YIDISNENLA MPFLTLFGIE DAKKTVVAAF DNNLNSKYLL ESDPSPSNIE EFCFGLAHGT
401: VSAYYKSQPI PDNQNASVVA VVGRTFDEVV LRSSENVLLE VHTPWCINCE ALSKQVEKLS QHFKGFENLV FARIDASANE HPKLTVDDYP TILLYKTGEK
501: ENPLKLSTKS SAKDMAVLIN KELKWKDQSG KDEL
101: APWCARSAEL MPRFAEAATD LKEIGSSVLM AKIDGERYSK VASQLEIKGF PTLLLFVNGT SQSYTGGFSS EEIVIWVQKK TGASTIKLDT VDEASGFLKK
201: HHTFILGLFE KSEDSSGHDE FVKAASLDNE IQFVETSSID VAKLLFPNLK TNNVFVGLVK TEAEKYTSYD GPCQAEKIVE FLNSNKFPLV TKLTESNTVR
301: VYSSPVKLQV MVFSKTDDFE SLAQPLEDIA RKFKSKLMLI YIDISNENLA MPFLTLFGIE DAKKTVVAAF DNNLNSKYLL ESDPSPSNIE EFCFGLAHGT
401: VSAYYKSQPI PDNQNASVVA VVGRTFDEVV LRSSENVLLE VHTPWCINCE ALSKQVEKLS QHFKGFENLV FARIDASANE HPKLTVDDYP TILLYKTGEK
501: ENPLKLSTKS SAKDMAVLIN KELKWKDQSG KDEL
Arabidopsis Description
PDIL1-6PDIL1-6 [Source:UniProtKB/TrEMBL;Acc:A0A178VNL8]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.