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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 7
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:endoplasmic reticulum
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH23443 Soybean endoplasmic reticulum 88.34 93.15
VIT_09s0002g04250.t01 Wine grape endoplasmic reticulum 67.88 66.11
PGSC0003DMT400006756 Potato endoplasmic reticulum 64.82 63.01
Solyc03g120720.2.1 Tomato plastid 64.44 62.64
AT3G16110.1 Thale cress endoplasmic reticulum 60.42 59.18
CDY68572 Canola endoplasmic reticulum 58.7 58.59
CDY47529 Canola endoplasmic reticulum 58.7 58.37
CDY52981 Canola endoplasmic reticulum 58.51 57.84
CDY02550 Canola endoplasmic reticulum 58.13 57.79
Bra018958.1-P Field mustard endoplasmic reticulum 58.32 57.66
GSMUA_Achr10P... Banana endoplasmic reticulum 59.46 57.59
AT1G52260.1 Thale cress endoplasmic reticulum 58.89 57.36
Bra014319.1-P Field mustard endoplasmic reticulum 44.55 56.42
Zm00001d045218_P002 Maize endoplasmic reticulum 52.2 51.61
Os06t0163400-01 Rice plasma membrane 51.63 50.66
TraesCS7A01G123900.1 Wheat endoplasmic reticulum 52.2 50.46
TraesCS7D01G121800.1 Wheat endoplasmic reticulum 52.2 50.18
TraesCS7B01G022800.1 Wheat endoplasmic reticulum 52.58 49.55
EER87912 Sorghum endoplasmic reticulum 51.63 49.54
HORVU7Hr1G026030.1 Barley cytosol 42.06 37.54
KRH22896 Soybean endoplasmic reticulum 31.74 29.75
KRH29922 Soybean endoplasmic reticulum 31.55 28.16
KRH24870 Soybean endoplasmic reticulum 31.17 28.15
KRH26418 Soybean endoplasmic reticulum 31.17 27.08
KRH18702 Soybean endoplasmic reticulum 24.67 26.06
KRH16370 Soybean endoplasmic reticulum 24.28 25.6
KRH69241 Soybean endoplasmic reticulum 4.02 25.0
KRH53259 Soybean endoplasmic reticulum 23.71 24.65
KRH53258 Soybean mitochondrion 17.4 23.1
KRH64644 Soybean nucleus 23.14 23.05
KRH64647 Soybean cytosol, mitochondrion 8.6 21.23
KRH68449 Soybean endoplasmic reticulum 13.58 19.61
KRH31823 Soybean endoplasmic reticulum 13.38 19.23
KRH34995 Soybean endoplasmic reticulum 15.3 18.48
KRG96732 Soybean endoplasmic reticulum 12.81 17.54
KRH69242 Soybean cytosol 9.37 17.25
KRH10410 Soybean endoplasmic reticulum 4.4 16.31
KRH14820 Soybean endoplasmic reticulum 13.19 15.75
KRH22935 Soybean endoplasmic reticulum 4.4 15.65
KRH73319 Soybean endoplasmic reticulum 13.0 15.53
KRH54865 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 9.18 15.14
Protein Annotations
Gene3D:3.40.30.10MapMan:50.5.3EMBL:ACUP02009113ProteinID:BAH89252.1UniProt:C6KXH6ncoils:Coil
EnsemblPlantsGene:GLYMA_15G015700GO:GO:0003674GO:GO:0003756GO:GO:0003824GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0006457GO:GO:0006950GO:GO:0008150
GO:GO:0009987GO:GO:0016853GO:GO:0019725GO:GO:0034976GO:GO:0045454InterPro:IPR013766
EnsemblPlants:KRH09876ProteinID:KRH09876ProteinID:KRH09876.1PFAM:PF00085PFAM:PF13848PFscan:PS51352
PANTHER:PTHR18929PANTHER:PTHR18929:SF121SUPFAM:SSF52833SignalP:SignalP-noTMInterPro:Thioredoxin-like_sfInterPro:Thioredoxin_domain
UniParc:UPI0001B04E7ESEG:seg::::
Description
hypothetical protein
Coordinates
chr15:-:1244525..1249605
Molecular Weight (calculated)
58807.3 Da
IEP (calculated)
4.605
GRAVY (calculated)
-0.154
Length
523 amino acids
Sequence
(BLAST)
001: MCTMKPTLRF ILVLLTLLLV LRFNVASEVE DELEELLAVD EEVEQEAEKG GEKLSEAEVL SKAQRIVIEL NNDNTERVVN GNEFVLVLGY APWCPRSAEL
101: MPHFAEAATS LKELGSPLVL AKLDADRYSK PASFLGVKGF PTLLLFVNGT SQPYSGGFAA DDIVIWAQKK TSTPVIRIGS VTEAEKFLRK YQTFLIGRFD
201: KFEGPDYEEF VSAAQSDNEI QFVETNQVEL AQVLYPDIKP TDQFLGIVKS EPERYTAYDG AFTMNKILEF VDYNKFPLVT KLTEMNSIRV YSSPIKLQVL
301: VFANIDDFKN LLETLQDVAK TFKSKIMFIY VDINDENLAK PFLTLFGLEE SKNTVVAAFD NAMSSKYLLE TKPTQSNIEE FCNNLVQGSL SPYFKSQPIP
401: DNTESSVHVI VGKTFDDEIL SSEKDVLLEV FTPWCINCEA TSKQVEKLAK HYKGSSNLIF ARIDASANEH PKLQVNDYPT LLLYRADDKA NPIKLSTKSS
501: LKELAASINK YVKVKNQVVK DEL
Best Arabidopsis Sequence Match ( AT3G16110.1 )
(BLAST)
001: MLTKPKPNSK FSILFTFLLL LSFLIFVARS SDVAVEAGSE EELDDLEQLL AVDEQLQEER PEQQSEAETV SKAQRIVVEL NGDNTKRLID GNEYVMVLGY
101: APWCARSAEL MPRFAEAATD LKEIGSSVLM AKIDGERYSK VASQLEIKGF PTLLLFVNGT SQSYTGGFSS EEIVIWVQKK TGASTIKLDT VDEASGFLKK
201: HHTFILGLFE KSEDSSGHDE FVKAASLDNE IQFVETSSID VAKLLFPNLK TNNVFVGLVK TEAEKYTSYD GPCQAEKIVE FLNSNKFPLV TKLTESNTVR
301: VYSSPVKLQV MVFSKTDDFE SLAQPLEDIA RKFKSKLMLI YIDISNENLA MPFLTLFGIE DAKKTVVAAF DNNLNSKYLL ESDPSPSNIE EFCFGLAHGT
401: VSAYYKSQPI PDNQNASVVA VVGRTFDEVV LRSSENVLLE VHTPWCINCE ALSKQVEKLS QHFKGFENLV FARIDASANE HPKLTVDDYP TILLYKTGEK
501: ENPLKLSTKS SAKDMAVLIN KELKWKDQSG KDEL
Arabidopsis Description
PDIL1-6PDIL1-6 [Source:UniProtKB/TrEMBL;Acc:A0A178VNL8]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.