Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 5
- plasma membrane 6
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
endoplasmic reticulum: 27224218 endoplasmic reticulum: 28499913 mitochondrion: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_18s0075g00210.t01 | Wine grape | endoplasmic reticulum | 54.04 | 59.09 |
| CDX73337 | Canola | endoplasmic reticulum | 57.74 | 57.47 |
| Bra034408.1-P | Field mustard | endoplasmic reticulum | 57.51 | 57.24 |
| CDY37102 | Canola | endoplasmic reticulum | 57.51 | 57.24 |
| AT1G35620.1 | Thale cress | endoplasmic reticulum | 57.51 | 56.59 |
| GSMUA_Achr3P19080_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 57.74 | 56.43 |
| GSMUA_Achr5P17020_001 | Banana | endoplasmic reticulum, golgi, mitochondrion, plasma membrane | 57.97 | 56.28 |
| Solyc06g065320.2.1 | Tomato | endoplasmic reticulum | 56.58 | 55.43 |
| PGSC0003DMT400070983 | Potato | endoplasmic reticulum | 55.2 | 55.07 |
| Solyc11g019920.1.1 | Tomato | plastid, unclear | 55.2 | 54.94 |
| TraesCS2A01G304300.1 | Wheat | endoplasmic reticulum | 52.19 | 54.72 |
| TraesCS2B01G321000.1 | Wheat | golgi | 52.42 | 54.44 |
| HORVU2Hr1G075810.1 | Barley | endoplasmic reticulum | 51.73 | 54.11 |
| Zm00001d025131_P001 | Maize | extracellular, plasma membrane | 51.96 | 53.57 |
| EES12182 | Sorghum | endoplasmic reticulum | 51.5 | 53.35 |
| Os04t0432500-01 | Rice | plasma membrane | 51.96 | 53.19 |
| Zm00001d016786_P001 | Maize | plasma membrane | 50.81 | 52.38 |
| Os02t0550300-00 | Rice | endoplasmic reticulum | 51.27 | 52.36 |
| TraesCS6A01G220100.1 | Wheat | golgi | 49.19 | 51.33 |
| TraesCS6D01G215100.1 | Wheat | endoplasmic reticulum | 49.42 | 51.32 |
| TraesCS6B01G261500.2 | Wheat | endoplasmic reticulum | 49.42 | 51.2 |
| TraesCS2D01G302900.1 | Wheat | endoplasmic reticulum | 51.96 | 49.89 |
| Zm00001d003654_P001 | Maize | endoplasmic reticulum | 50.81 | 49.77 |
| PGSC0003DMT400067074 | Potato | endoplasmic reticulum | 55.89 | 49.69 |
| HORVU6Hr1G059710.1 | Barley | endoplasmic reticulum | 48.27 | 46.65 |
| OQU85098 | Sorghum | endoplasmic reticulum | 50.58 | 44.69 |
| KRH69241 | Soybean | endoplasmic reticulum | 6.47 | 33.33 |
| KRH10410 | Soybean | endoplasmic reticulum | 7.16 | 21.99 |
| KRH22935 | Soybean | endoplasmic reticulum | 7.16 | 21.09 |
| KRH22896 | Soybean | endoplasmic reticulum | 26.33 | 20.43 |
| KRH53259 | Soybean | endoplasmic reticulum | 23.33 | 20.08 |
| KRH24870 | Soybean | endoplasmic reticulum | 25.87 | 19.34 |
| KRH64644 | Soybean | nucleus | 23.33 | 19.24 |
| KRH29922 | Soybean | endoplasmic reticulum | 25.64 | 18.94 |
| KRH53258 | Soybean | mitochondrion | 17.09 | 18.78 |
| KRH31823 | Soybean | endoplasmic reticulum | 15.7 | 18.68 |
| KRH26418 | Soybean | endoplasmic reticulum | 25.87 | 18.6 |
| KRH16370 | Soybean | endoplasmic reticulum | 20.55 | 17.94 |
| KRH18702 | Soybean | endoplasmic reticulum | 19.86 | 17.37 |
| KRH68449 | Soybean | endoplasmic reticulum | 14.32 | 17.13 |
| KRH23443 | Soybean | endoplasmic reticulum | 18.48 | 16.13 |
| KRG96732 | Soybean | endoplasmic reticulum | 14.09 | 15.97 |
| KRH09876 | Soybean | endoplasmic reticulum | 18.48 | 15.3 |
| KRH69242 | Soybean | cytosol | 9.7 | 14.79 |
| KRH54865 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 9.93 | 13.56 |
| KRH14820 | Soybean | endoplasmic reticulum | 13.63 | 13.47 |
| KRH73319 | Soybean | endoplasmic reticulum | 13.39 | 13.24 |
| KRH64647 | Soybean | cytosol, mitochondrion | 3.93 | 8.02 |
Protein Annotations
| EntrezGene:100791778 | MapMan:18.11.1.3 | Gene3D:3.40.30.10 | EMBL:ACUP02006646 | EnsemblPlantsGene:GLYMA_10G217600 | GO:GO:0003674 |
| GO:GO:0003756 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005783 | GO:GO:0006457 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0009505 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0019725 | GO:GO:0030312 | GO:GO:0034976 | GO:GO:0045454 | UniProt:I1LD87 | InterPro:IPR013766 |
| EnsemblPlants:KRH34995 | ProteinID:KRH34995 | ProteinID:KRH34995.1 | EMBL:LC158001 | PFAM:PF00085 | PFAM:PF13848 |
| PRINTS:PR00421 | ScanProsite:PS00194 | PFscan:PS51352 | PANTHER:PTHR18929 | PANTHER:PTHR18929:SF137 | SUPFAM:SSF52833 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI000233C204 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:-:44929764..44934766
Molecular Weight (calculated)
49242.9 Da
IEP (calculated)
4.637
GRAVY (calculated)
-0.112
Length
433 amino acids
Sequence
(BLAST)
(BLAST)
001: MRMKRVFVVY SVLLLLVQFW LGEAETFSVD GKVLVLDESN FDSAIASFDH ILVDFYAPWC GHCKRLSPEL DAAAPVLATL KEPIIIAKVD ADKHTRLAKK
101: YDVDAYPTIL LFNHGVPTEY RGPRKADLLV RYLKKFSASD VSILDSDSAV NMFVEEAGTF FPIYIGFGLN SSVLEKFGIK YKKNAWFSVA KDFSEDLMVL
201: HDFDKIPALV SLNPQYNERN TFYGPFEEDF LEDFVRQNLI PLAVPVSYET LKLMKADGRK IVLTIVEDED EETTRELIKL LKAAASANRD LIFGYVGVKQ
301: MEEFAENFDI DTKLPKMVIW DKSDDYLSVV DSETIEGEDQ GTQITKFLEG YREGRTIKKT FSGPSLMRFI HRSFDIRMVY IIVFVVAVLM LIQTFSKGGD
401: EYQSVPNQVQ TDHAISSVSE AENNEYKPGD KED
101: YDVDAYPTIL LFNHGVPTEY RGPRKADLLV RYLKKFSASD VSILDSDSAV NMFVEEAGTF FPIYIGFGLN SSVLEKFGIK YKKNAWFSVA KDFSEDLMVL
201: HDFDKIPALV SLNPQYNERN TFYGPFEEDF LEDFVRQNLI PLAVPVSYET LKLMKADGRK IVLTIVEDED EETTRELIKL LKAAASANRD LIFGYVGVKQ
301: MEEFAENFDI DTKLPKMVIW DKSDDYLSVV DSETIEGEDQ GTQITKFLEG YREGRTIKKT FSGPSLMRFI HRSFDIRMVY IIVFVVAVLM LIQTFSKGGD
401: EYQSVPNQVQ TDHAISSVSE AENNEYKPGD KED
001: MRSLKLLLCW ISFLTLSISI SASSDDQFTL DGTVLELTDS NFDSAISTFD CIFVDFYAPW CGHCKRLNPE LDAAAPILAK LKQPIVIAKL NADKYSRLAR
101: KIEIDAFPTL MLYNHGVPME YYGPRKADLL VRYLKKFVAP DVAVLESDST VKEFVEDAGT FFPVFIGFGL NESIISGLGR KYKKKAWFAV SKEVSEDTMV
201: SYDFDKAPAL VANHPTYNEH SVFYGPFEDG FLEEFVKQSF LPLILPINHD TLKLLKDDER KIVLTIVEDE THESLEKLYK ALRAAAHANR DLVFGYVGVK
301: QFEEFVDSFH VDKKTNLPKI VVWDGDEEYD QVTGIETITQ EEDHLTQVSR FLEGYREGRT EKKKINGPSF MGFINSMIGI RSVYILVFLV AVIMMLRSLG
401: QVEEPTGVRT ATAVRERVDQ ATTVPEDESS EHKPSDKKED
101: KIEIDAFPTL MLYNHGVPME YYGPRKADLL VRYLKKFVAP DVAVLESDST VKEFVEDAGT FFPVFIGFGL NESIISGLGR KYKKKAWFAV SKEVSEDTMV
201: SYDFDKAPAL VANHPTYNEH SVFYGPFEDG FLEEFVKQSF LPLILPINHD TLKLLKDDER KIVLTIVEDE THESLEKLYK ALRAAAHANR DLVFGYVGVK
301: QFEEFVDSFH VDKKTNLPKI VVWDGDEEYD QVTGIETITQ EEDHLTQVSR FLEGYREGRT EKKKINGPSF MGFINSMIGI RSVYILVFLV AVIMMLRSLG
401: QVEEPTGVRT ATAVRERVDQ ATTVPEDESS EHKPSDKKED
Arabidopsis Description
PDIL5-2Protein disulfide-isomerase 5-2 [Source:UniProtKB/Swiss-Prot;Acc:Q94F09]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.