Factsheet for TraesCS6A01G220100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 5
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G215100.1	Wheat	endoplasmic reticulum	97.83	97.36
TraesCS6B01G261500.2	Wheat	endoplasmic reticulum	95.9	95.22
HORVU6Hr1G059710.1	Barley	endoplasmic reticulum	89.64	83.04
Zm00001d016786_P001	Maize	plasma membrane	77.59	76.67
Os02t0550300-00	Rice	endoplasmic reticulum	74.94	73.35
TraesCS2A01G304300.1	Wheat	endoplasmic reticulum	67.47	67.8
OQU85098	Sorghum	endoplasmic reticulum	76.63	64.9
VIT_18s0075g00210.t01	Wine grape	endoplasmic reticulum	50.6	53.03
GSMUA_Achr3P19080_001	Banana	endoplasmic reticulum, golgi, plasma membrane	55.9	52.37
GSMUA_Achr5P17020_001	Banana	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	56.14	52.24
KRH34995	Soybean	endoplasmic reticulum	51.33	49.19
Bra034408.1-P	Field mustard	endoplasmic reticulum	51.33	48.97
CDY37102	Canola	endoplasmic reticulum	51.33	48.97
AT1G35620.1	Thale cress	endoplasmic reticulum	51.81	48.86
Solyc11g019920.1.1	Tomato	plastid, unclear	51.08	48.74
CDX73337	Canola	endoplasmic reticulum	51.08	48.74
PGSC0003DMT400070983	Potato	endoplasmic reticulum	50.36	48.16
Solyc06g065320.2.1	Tomato	endoplasmic reticulum	49.16	46.15
PGSC0003DMT400067074	Potato	endoplasmic reticulum	48.67	41.48
TraesCS4A01G107900.1	Wheat	endoplasmic reticulum	7.95	21.85
TraesCS6A01G003200.1	Wheat	endoplasmic reticulum	13.25	18.71
TraesCS2A01G306500.1	Wheat	endoplasmic reticulum	22.41	17.99
TraesCS4A01G214200.2	Wheat	plastid	21.69	17.48
TraesCS6A01G000600.1	Wheat	endoplasmic reticulum	23.37	16.75
TraesCS6A01G001100.1	Wheat	endoplasmic reticulum	23.13	16.49
TraesCS1A01G097700.1	Wheat	golgi	13.73	15.53
TraesCS7A01G123900.1	Wheat	endoplasmic reticulum	19.04	14.6
TraesCS5A01G234400.1	Wheat	golgi	13.98	13.18

Protein Annotations

MapMan:18.11.1.3	Gene3D:3.40.30.10	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454
InterPro:IPR013766	PFAM:PF00085	PFAM:PF13848	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352
PANTHER:PTHR18929	PANTHER:PTHR18929:SF167	SUPFAM:SSF52833	SignalP:SignalP-noTM	TMHMM:TMhelix	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	EnsemblPlantsGene:TraesCS6A01G220100	EnsemblPlants:TraesCS6A01G220100.1	TIGR:cd02961	SEG:seg

Description

No Description!

Coordinates

chr6A:-:409091276..409093673

Molecular Weight (calculated)

46115.3 Da

IEP (calculated)

4.942

GRAVY (calculated)

-0.046

Length

415 amino acids

Sequence
(BLAST)

001: MAVDKQRLLP LFVLALVTPA CLASGGEEPA RFQIPRDGSV VELDEGNFEA AVAAVDFLFV DFHAPWCGHC KRLSPQLDEA APVLAGLSTP IVVAKVNAEK
101: YKKLRSKYGV DGFPTLMLFD HGVPTEYTGS RKAGQLVESL RKLVAPDVSV LTSDAAIKSF VQEAGVGFPL FIGFGVDESS IAEYGARYKK KAWFSTAKDF
201: SEDLMAVYDF DKIPALVSLN PKYNEQSVFY GPFEGTFLED FIRQSLLPIT VPINAETVKM LKDDDRKVVL AVLQDDSDET SMRLIKVLRS AANANHDLVF
301: GYVGVNQWEE FTEPFHDSKS SQLPKLVVWD KDEEYEVVEG LENLEEGDHG SQISRFLEAY RAGRTIKKTF GRRFPTLLGV NALYILLLLV AVLVVLMFFS
401: GQGKEVRQPT RAHQE

Best Arabidopsis Sequence Match ( AT1G35620.1 )
(BLAST)

001: MRSLKLLLCW ISFLTLSISI SASSDDQFTL DGTVLELTDS NFDSAISTFD CIFVDFYAPW CGHCKRLNPE LDAAAPILAK LKQPIVIAKL NADKYSRLAR
101: KIEIDAFPTL MLYNHGVPME YYGPRKADLL VRYLKKFVAP DVAVLESDST VKEFVEDAGT FFPVFIGFGL NESIISGLGR KYKKKAWFAV SKEVSEDTMV
201: SYDFDKAPAL VANHPTYNEH SVFYGPFEDG FLEEFVKQSF LPLILPINHD TLKLLKDDER KIVLTIVEDE THESLEKLYK ALRAAAHANR DLVFGYVGVK
301: QFEEFVDSFH VDKKTNLPKI VVWDGDEEYD QVTGIETITQ EEDHLTQVSR FLEGYREGRT EKKKINGPSF MGFINSMIGI RSVYILVFLV AVIMMLRSLG
401: QVEEPTGVRT ATAVRERVDQ ATTVPEDESS EHKPSDKKED

Arabidopsis Description

PDIL5-2Protein disulfide-isomerase 5-2 [Source:UniProtKB/Swiss-Prot;Acc:Q94F09]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.