Factsheet for TraesCS6A01G003200.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	peroxisome, plastid, secretory
iPSORT:	secretory
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G114600.1	Barley	endoplasmic reticulum	79.25	79.25
HORVU6Hr1G001800.2	Barley	endoplasmic reticulum	77.21	72.99
TraesCS6A01G000600.1	Wheat	endoplasmic reticulum	56.8	28.84
TraesCS6A01G001100.1	Wheat	endoplasmic reticulum	56.12	28.35
TraesCS4A01G107900.1	Wheat	endoplasmic reticulum	9.86	19.21
TraesCS2A01G304300.1	Wheat	endoplasmic reticulum	19.05	13.56
TraesCS6A01G220100.1	Wheat	golgi	18.71	13.25
TraesCS7A01G123900.1	Wheat	endoplasmic reticulum	22.79	12.38
TraesCS2A01G306500.1	Wheat	endoplasmic reticulum	21.43	12.19
TraesCS4A01G214200.2	Wheat	plastid	21.09	12.04
TraesCS1A01G097700.1	Wheat	golgi	13.61	10.9
TraesCS5A01G234400.1	Wheat	golgi	11.9	7.95
Zm00001d019793_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS6A01G003200.1	EnsemblPlantsGene:TraesCS6A01G003200	Gene3D:3.40.30.10	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0045454	InterPro:IPR013766	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	PANTHER:PTHR18929	PANTHER:PTHR18929:SF121
PFAM:PF00085	PFscan:PS51352	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF52833	TIGR:cd02961
TIGR:cd02981	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:1430141..1431622

Molecular Weight (calculated)

32174.0 Da

IEP (calculated)

4.697

GRAVY (calculated)

-0.074

Length

294 amino acids

Sequence
(BLAST)

001: MAVMPIPMPS PWFLLLLLLP CSSTSTPAPD VDLDYIINNT GGDASASNNL EDDSPAYPGY NQDLFANDDD SPQNPVDEAH VVVLTAANFS SFLAGRRHVM
101: VNFYVPWCYW SRKLAPEYAA AASHLADTGL DVVLAKVDIA KVENNQLARA HDVHGSPIVH FFIDGVPRGY RYYGERTKDA IVAWITKKLG PAVRNVTTVD
201: EAEKIITGHG MATLAFLDSL SGAHSDELAA ASKLEDSINV YQTTSPDVAE LFGVDPEAKR PFVVLLEADQ EGKLTVSRYK RLRLSDLFLN HSLL

Best Arabidopsis Sequence Match ( AT3G54960.1 )
(BLAST)

001: MASSSTSISL LLFVSFILLL VNSRAENASS GSDLDEELAF LAAEESKEQS HGGGSYHEEE HDHQHRDFEN YDDLEQGGGE FHHGDHGYEE EPLPPVDEKD
101: VAVLTKDNFT EFVGNNSFAM VEFYAPWCGA CQALTPEYAA AATELKGLAA LAKIDATEEG DLAQKYEIQG FPTVFLFVDG EMRKTYEGER TKDGIVTWLK
201: KKASPSIHNI TTKEEAERVL SAEPKLVFGF LNSLVGSESE ELAAASRLED DLSFYQTASP DIAKLFEIET QVKRPALVLL KKEEEKLARF DGNFTKTAIA
301: EFVSANKVPL VINFTREGAS LIFESSVKNQ LILFAKANES EKHLPTLREV AKSFKGKFVF VYVQMDNEDY GEAVSGFFGV TGAAPKVLVY TGNEDMRKFI
401: LDGELTVNNI KTLAEDFLAD KLKPFYKSDP LPENNDGDVK VIVGNNFDEI VLDESKDVLL EIYAPWCGHC QSFEPIYNKL GKYLKGIDSL VVAKMDGTSN
501: EHPRAKADGF PTILFFPGGN KSFDPIAVDV DRTVVELYKF LKKHASIPFK LEKPATPEPV ISTMKSDEKI EGDSSKDEL

Arabidopsis Description

PDIL1-3PDIL1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VF09]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.