Factsheet for TraesCS7A01G123900.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
endoplasmic reticulum 7
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

endoplasmic reticulum: 25849633

gfp PMID: 25849633 doi

S Kimura, Y Higashino, Y Kitao, T Masuda, R Urade

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G121800.1	Wheat	endoplasmic reticulum	96.3	95.77
TraesCS7B01G022800.1	Wheat	endoplasmic reticulum	96.67	94.23
Os06t0163400-01	Rice	plasma membrane	80.04	81.24
Zm00001d045218_P002	Maize	endoplasmic reticulum	77.82	79.58
EER87912	Sorghum	endoplasmic reticulum	78.19	77.61
HORVU7Hr1G026030.1	Barley	cytosol	71.53	66.04
GSMUA_Achr10P...	Banana	endoplasmic reticulum	59.52	59.63
KRH23443	Soybean	endoplasmic reticulum	48.61	53.02
KRH09876	Soybean	endoplasmic reticulum	50.46	52.2
VIT_09s0002g04250.t01	Wine grape	endoplasmic reticulum	51.76	52.14
PGSC0003DMT400006756	Potato	endoplasmic reticulum	50.09	50.37
Solyc03g120720.2.1	Tomato	plastid	49.91	50.19
Bra018958.1-P	Field mustard	endoplasmic reticulum	48.24	49.34
CDY52981	Canola	endoplasmic reticulum	48.06	49.15
CDY47529	Canola	endoplasmic reticulum	47.5	48.86
CDY68572	Canola	endoplasmic reticulum	47.32	48.85
CDY02550	Canola	endoplasmic reticulum	46.95	48.29
AT1G52260.1	Thale cress	endoplasmic reticulum	47.32	47.67
AT3G16110.1	Thale cress	endoplasmic reticulum	46.21	46.82
Bra014319.1-P	Field mustard	endoplasmic reticulum	34.75	45.52
TraesCS6A01G000600.1	Wheat	endoplasmic reticulum	31.61	29.53
TraesCS6A01G001100.1	Wheat	endoplasmic reticulum	31.42	29.21
TraesCS2A01G306500.1	Wheat	endoplasmic reticulum	22.74	23.79
TraesCS6A01G003200.1	Wheat	endoplasmic reticulum	12.38	22.79
TraesCS4A01G214200.2	Wheat	plastid	21.26	22.33
TraesCS2A01G304300.1	Wheat	endoplasmic reticulum	15.16	19.85
TraesCS6A01G220100.1	Wheat	golgi	14.6	19.04
TraesCS1A01G097700.1	Wheat	golgi	12.75	18.8
TraesCS4A01G107900.1	Wheat	endoplasmic reticulum	4.44	15.89
TraesCS5A01G234400.1	Wheat	golgi	12.57	15.45

Protein Annotations

Gene3D:3.40.30.10	MapMan:50.5.3	ncoils:Coil	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0045454	InterPro:IPR013766	PFAM:PF00085	PFAM:PF13848	PFscan:PS51352	PANTHER:PTHR18929
PANTHER:PTHR18929:SF121	SUPFAM:SSF52833	SignalP:SignalP-noTM	TMHMM:TMhelix	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain
EnsemblPlantsGene:TraesCS7A01G123900	EnsemblPlants:TraesCS7A01G123900.1	TIGR:cd02981	TIGR:cd02982	TIGR:cd02995	SEG:seg

Description

No Description!

Coordinates

chr7A:+:80062264..80067137

Molecular Weight (calculated)

59597.1 Da

IEP (calculated)

4.672

GRAVY (calculated)

-0.157

Length

541 amino acids

Sequence
(BLAST)

001: MRATRLLAAA ALLAALLAVS AAAAKLDLDE VDDSEVLEAL LAVDEEEEDA APPGGGGGAE AVRRTQSMVL VLDNDNAARA VRDHPELLLL GYAPWCERSA
101: KLMPRFAEAA AALRAMGSAV AFAKLDGERF PKAASTVGVN GFPSVLLFVN GTEHAYTGLH TKDAIVTWVR KKTGTPVIRI ESKDSAEELL KKGQTFALGL
201: FKNYEGTDHE EFMKAATAEN EVQFVETNDR NVAKILFPGI ASEEQFLGLV KSEPEKFEKF DGAFEEKEIL QFVELNKFPL ITVFTDLNSA KVYSSPIKLQ
301: VFTFAEAYDF EDLESIVQEV ARGFKTKIMF IYVDTAEENL AKPFLTLYGL EGDKPTVTAF DTSKGAKYVL EADINAKNLK EFSLSLLDGT LPPYFRSEPV
401: PQEEGLVEKV VGRTFDSSVL QSPHNILLEA HAPWCVDCEA ISKNIEKLAK HFSGLDNLKF ARIDASVNEH PKLQVNNYPT LLLYPAEDKT NPIKLSKKLS
501: LKDMARFLKE KLQISDVEIK EKLQTPNIET VAAADNVKDE L

Best Arabidopsis Sequence Match ( AT3G16110.1 )
(BLAST)

001: MLTKPKPNSK FSILFTFLLL LSFLIFVARS SDVAVEAGSE EELDDLEQLL AVDEQLQEER PEQQSEAETV SKAQRIVVEL NGDNTKRLID GNEYVMVLGY
101: APWCARSAEL MPRFAEAATD LKEIGSSVLM AKIDGERYSK VASQLEIKGF PTLLLFVNGT SQSYTGGFSS EEIVIWVQKK TGASTIKLDT VDEASGFLKK
201: HHTFILGLFE KSEDSSGHDE FVKAASLDNE IQFVETSSID VAKLLFPNLK TNNVFVGLVK TEAEKYTSYD GPCQAEKIVE FLNSNKFPLV TKLTESNTVR
301: VYSSPVKLQV MVFSKTDDFE SLAQPLEDIA RKFKSKLMLI YIDISNENLA MPFLTLFGIE DAKKTVVAAF DNNLNSKYLL ESDPSPSNIE EFCFGLAHGT
401: VSAYYKSQPI PDNQNASVVA VVGRTFDEVV LRSSENVLLE VHTPWCINCE ALSKQVEKLS QHFKGFENLV FARIDASANE HPKLTVDDYP TILLYKTGEK
501: ENPLKLSTKS SAKDMAVLIN KELKWKDQSG KDEL

Arabidopsis Description

PDIL1-6PDIL1-6 [Source:UniProtKB/TrEMBL;Acc:A0A178VNL8]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.