Factsheet for Solyc03g120720.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 5
plasma membrane 5
golgi 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006756	Potato	endoplasmic reticulum	95.35	95.35
VIT_09s0002g04250.t01	Wine grape	endoplasmic reticulum	66.54	66.67
KRH23443	Soybean	endoplasmic reticulum	59.85	64.92
KRH09876	Soybean	endoplasmic reticulum	62.64	64.44
AT3G16110.1	Thale cress	endoplasmic reticulum	59.29	59.74
CDY68572	Canola	endoplasmic reticulum	58.18	59.73
CDY02550	Canola	endoplasmic reticulum	57.81	59.13
CDY47529	Canola	endoplasmic reticulum	57.62	58.94
AT1G52260.1	Thale cress	endoplasmic reticulum	58.74	58.85
Bra018958.1-P	Field mustard	endoplasmic reticulum	57.25	58.22
GSMUA_Achr10P...	Banana	endoplasmic reticulum	58.36	58.15
CDY52981	Canola	endoplasmic reticulum	57.06	58.03
Bra014319.1-P	Field mustard	endoplasmic reticulum	44.24	57.63
Zm00001d045218_P002	Maize	endoplasmic reticulum	49.81	50.66
TraesCS7A01G123900.1	Wheat	endoplasmic reticulum	50.19	49.91
Os06t0163400-01	Rice	plasma membrane	49.44	49.91
TraesCS7D01G121800.1	Wheat	endoplasmic reticulum	49.44	48.9
TraesCS7B01G022800.1	Wheat	endoplasmic reticulum	50.0	48.47
EER87912	Sorghum	endoplasmic reticulum	49.07	48.44
HORVU7Hr1G026030.1	Barley	cytosol	39.59	36.35
Solyc11g069400.1.1	Tomato	plastid	31.23	28.97
Solyc06g075210.2.1	Tomato	unclear	27.7	27.14
Solyc04g049450.2.1	Tomato	endoplasmic reticulum, nucleus, plastid	27.88	26.64
Solyc06g060290.2.1	Tomato	plastid	20.26	24.89
Solyc05g056400.2.1	Tomato	plastid	21.38	21.74
Solyc05g018700.2.1	Tomato	plastid	19.52	21.17
Solyc06g005940.2.1	Tomato	nucleus, plastid	19.33	20.84
Solyc11g069690.1.1	Tomato	extracellular	4.83	20.8
Solyc01g100320.2.1	Tomato	extracellular	13.01	19.5
Solyc11g019920.1.1	Tomato	plastid, unclear	15.24	18.85
Solyc06g065320.2.1	Tomato	endoplasmic reticulum	15.24	18.55
Solyc07g049450.2.1	Tomato	nucleus	12.45	15.51

Protein Annotations

Gene3D:3.40.30.10	MapMan:50.5.3	GO:GO:0003674	GO:GO:0003756	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006457	GO:GO:0006950
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0034976	GO:GO:0045454	InterPro:IPR013766
UniProt:K4BMM1	PFAM:PF00085	PFAM:PF13848	PFscan:PS51352	PANTHER:PTHR18929	PANTHER:PTHR18929:SF121
SUPFAM:SSF52833	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc03g120720.2	EnsemblPlants:Solyc03g120720.2.1	TMHMM:TMhelix	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	UniParc:UPI0002766F3A	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:+:69013452..69019645

Molecular Weight (calculated)

60679.5 Da

IEP (calculated)

4.538

GRAVY (calculated)

-0.218

Length

538 amino acids

Sequence
(BLAST)

001: MFTPKPTSRF ILFTLILLLL FSFLAPSISS ELDLDDEEGD DMEGLEELMA LDEEDDLQQK PQGGHHEKPS EAEFVSKAQR IVLELNNDNT KRAIDGNEYV
101: LVLGYTPWCA RSAELMPKFA EAATALKELG SPLLMAKIDA ERYPKVASTL EIRGFPTLLL FVNGTSQPYT GGFSAEELVI WARKKTGVPI VRISSDAEAR
201: HFLKKHSIFV VGLFEKFEGP DYDAFTKAAE MDNEIQFVET NNAETAKHLY PDFKPTSLFL GLVKSEPEKY TEYEGIFSTD GILQFLDDNK FPLTTVLTEL
301: NAAKVYSNIN KLQVLIIAET DDFKKLVEPL QDVARKFKSK IMFIFVDIRE ENLAKPFLSM VGLEESKDSV VVSFNYSSSL KYLLESDTTP TSIEEFCSGL
401: LSGTVSPYYK SQPIPDNKNM SILTVVGKTF DELILNSPEN ILLEIYTPWC ITCETTSKQM EKLAKHFKGL DNLIFARIDA SLNEHPKLQV DDYPTLLFYL
501: ADDKTNPIPL PTKSSTKELA ALINKNLKEH SREIRDEL

Best Arabidopsis Sequence Match ( AT3G16110.1 )
(BLAST)

001: MLTKPKPNSK FSILFTFLLL LSFLIFVARS SDVAVEAGSE EELDDLEQLL AVDEQLQEER PEQQSEAETV SKAQRIVVEL NGDNTKRLID GNEYVMVLGY
101: APWCARSAEL MPRFAEAATD LKEIGSSVLM AKIDGERYSK VASQLEIKGF PTLLLFVNGT SQSYTGGFSS EEIVIWVQKK TGASTIKLDT VDEASGFLKK
201: HHTFILGLFE KSEDSSGHDE FVKAASLDNE IQFVETSSID VAKLLFPNLK TNNVFVGLVK TEAEKYTSYD GPCQAEKIVE FLNSNKFPLV TKLTESNTVR
301: VYSSPVKLQV MVFSKTDDFE SLAQPLEDIA RKFKSKLMLI YIDISNENLA MPFLTLFGIE DAKKTVVAAF DNNLNSKYLL ESDPSPSNIE EFCFGLAHGT
401: VSAYYKSQPI PDNQNASVVA VVGRTFDEVV LRSSENVLLE VHTPWCINCE ALSKQVEKLS QHFKGFENLV FARIDASANE HPKLTVDDYP TILLYKTGEK
501: ENPLKLSTKS SAKDMAVLIN KELKWKDQSG KDEL

Arabidopsis Description

PDIL1-6PDIL1-6 [Source:UniProtKB/TrEMBL;Acc:A0A178VNL8]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.