Skip to main content
crop-pal logo
Tomato
Search for another protein from :
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plastid, nucleus

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 8
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • plastid 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, nucleus, plastid
Any Predictor:nucleus, plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:endoplasmic reticulum
 plastid: 22908117
nucleus: 25464976
plastid: 26371478
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 29145071 doi
P Ibort, H Imai, M Uemura, R Aroca
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400033517 Potato endoplasmic reticulum, mitochondrion 97.16 97.16
KRH22896 Soybean endoplasmic reticulum 69.27 69.89
VIT_06s0004g02890.t01 Wine grape endoplasmic reticulum 69.09 67.42
KRH24870 Soybean endoplasmic reticulum 65.36 63.56
KRH26418 Soybean endoplasmic reticulum 67.85 63.46
KRH29922 Soybean endoplasmic reticulum 65.72 63.14
Solyc11g069400.1.1 Tomato plastid 62.52 60.69
Os02t0100100-01 Rice plasma membrane 57.19 57.19
EES06089 Sorghum endoplasmic reticulum 57.55 56.64
Zm00001d014912_P003 Maize extracellular, plasma membrane 55.77 55.97
Zm00001d054106_P003 Maize endoplasmic reticulum 56.48 55.69
Solyc06g075210.2.1 Tomato unclear 53.29 54.64
TraesCS6A01G001100.1 Wheat endoplasmic reticulum 56.13 54.3
TraesCS6A01G000600.1 Wheat endoplasmic reticulum 55.77 54.23
TraesCS3B01G532200.1 Wheat endoplasmic reticulum 56.48 54.08
TraesCS6D01G004700.1 Wheat endoplasmic reticulum 56.13 53.83
TraesCS6D01G005200.1 Wheat golgi 55.95 53.57
TraesCS6B01G005500.1 Wheat endoplasmic reticulum 54.71 51.85
HORVU6Hr1G001700.1 Barley endoplasmic reticulum, plastid 56.48 50.08
TraesCS6B01G005100.1 Wheat endoplasmic reticulum 26.29 36.82
Solyc06g060290.2.1 Tomato plastid 24.33 31.28
Solyc05g056400.2.1 Tomato plastid 28.06 29.87
Solyc06g005940.2.1 Tomato nucleus, plastid 25.4 28.66
Solyc03g120720.2.1 Tomato plastid 26.64 27.88
Solyc01g100320.2.1 Tomato extracellular 17.58 27.58
Solyc05g018700.2.1 Tomato plastid 23.27 26.41
Solyc11g069690.1.1 Tomato extracellular 5.68 25.6
Solyc07g049450.2.1 Tomato nucleus 15.63 20.37
Solyc06g065320.2.1 Tomato endoplasmic reticulum 15.99 20.36
Solyc11g019920.1.1 Tomato plastid, unclear 15.1 19.54
Protein Annotations
Gene3D:3.40.30.10MapMan:50.5.3InterPro:Disulphide_isomeraseGO:GO:0003674GO:GO:0003756GO:GO:0003824
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0006457
GO:GO:0006950GO:GO:0008150GO:GO:0009987GO:GO:0016853GO:GO:0019725GO:GO:0034976
GO:GO:0045454InterPro:IPR013766UniProt:K4BRS2PFAM:PF00085PFAM:PF13848PRINTS:PR00421
ScanProsite:PS00194PFscan:PS51352PANTHER:PTHR18929PANTHER:PTHR18929:SF121InterPro:Prot_disulphide_isomeraseSUPFAM:SSF52833
SignalP:SignalP-noTMEnsemblPlantsGene:Solyc04g049450.2EnsemblPlants:Solyc04g049450.2.1TIGRFAMs:TIGR01126TIGRFAMs:TIGR01130InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CSInterPro:Thioredoxin_domainUniParc:UPI0002766809SEG:seg::
Description
Protein disulfide-isomerase [Source:UniProtKB/TrEMBL;Acc:K4BRS2]
Coordinates
chr4:+:41971520..41977035
Molecular Weight (calculated)
63099.9 Da
IEP (calculated)
4.382
GRAVY (calculated)
-0.374
Length
563 amino acids
Sequence
(BLAST)
001: MAMKKYLILS IFLLNLIFFR TAFSSVVEEE EDLSFLEEED SDAHSDSNPY GDHHDFENYE DLEDDSSDHG EDSYEPPAVD EKDVAVLKEG NFSEFISKNK
101: YVMVEFYAPW CGHCQALAPE YAAAATELKG ENVMLAKVDA TEEAELAQKY DVQGYPTVFF LIDGVHKTYN GERNKDAIIS WIKKKTGPVL SNITTVEEAE
201: QILKDEKKVV LGYLNDLVGD KSEELAAAAA LEDDVNFYQT ANPDVAKLFH IDSQAQRPAL VIIKKEAENI NHFDGEFTKS AIAKFVFENK LPLVTNFTRE
301: SASEIFENPI TKQLILFATS KDSEKFLPIF QEAVKAFKGK LICVFVEIDN EDVGKPVSEY FGVSGDAPRV LAYTGNEDGR KFILEGEITL DGVKSFGEKF
401: LEDNLKPFYK SDPIPETNDG DVKIVVGNNF DEIVLDESKD VLLELYAPWC GHCQSLEPIY NKLGKHLRGI DSLVIAKMDG TTNEHPRAKS DGFPTLLFFP
501: AGNKSFEPIT VDTDRTVVAF YKFLKKHAST PFKIQKPVST QRTTESDASL SHESTTNDAK DEL
Best Arabidopsis Sequence Match ( AT3G54960.1 )
(BLAST)
001: MASSSTSISL LLFVSFILLL VNSRAENASS GSDLDEELAF LAAEESKEQS HGGGSYHEEE HDHQHRDFEN YDDLEQGGGE FHHGDHGYEE EPLPPVDEKD
101: VAVLTKDNFT EFVGNNSFAM VEFYAPWCGA CQALTPEYAA AATELKGLAA LAKIDATEEG DLAQKYEIQG FPTVFLFVDG EMRKTYEGER TKDGIVTWLK
201: KKASPSIHNI TTKEEAERVL SAEPKLVFGF LNSLVGSESE ELAAASRLED DLSFYQTASP DIAKLFEIET QVKRPALVLL KKEEEKLARF DGNFTKTAIA
301: EFVSANKVPL VINFTREGAS LIFESSVKNQ LILFAKANES EKHLPTLREV AKSFKGKFVF VYVQMDNEDY GEAVSGFFGV TGAAPKVLVY TGNEDMRKFI
401: LDGELTVNNI KTLAEDFLAD KLKPFYKSDP LPENNDGDVK VIVGNNFDEI VLDESKDVLL EIYAPWCGHC QSFEPIYNKL GKYLKGIDSL VVAKMDGTSN
501: EHPRAKADGF PTILFFPGGN KSFDPIAVDV DRTVVELYKF LKKHASIPFK LEKPATPEPV ISTMKSDEKI EGDSSKDEL
Arabidopsis Description
PDIL1-3PDIL1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VF09]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.