Factsheet for Solyc07g049450.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 6
endoplasmic reticulum 8
vacuole 5
plasma membrane 5
golgi 5
plastid 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

nucleus: 25464976
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001769	Potato	extracellular	98.61	98.61
VIT_12s0059g01560.t01	Wine grape	endoplasmic reticulum	80.56	80.37
GSMUA_Achr7P12170_001	Banana	endoplasmic reticulum	79.17	79.35
KRH73319	Soybean	endoplasmic reticulum	79.86	78.77
KRH14820	Soybean	endoplasmic reticulum	79.63	78.54
EER96832	Sorghum	endoplasmic reticulum	77.55	76.31
Os09t0451500-02	Rice	plasma membrane	77.78	76.19
Zm00001d020687_P002	Maize	endoplasmic reticulum	77.31	75.74
TraesCS5B01G232900.1	Wheat	golgi	75.93	74.55
Zm00001d005866_P003	Maize	endoplasmic reticulum	75.93	74.38
TraesCS5A01G234400.1	Wheat	golgi	75.69	74.32
Bra015375.1-P	Field mustard	endoplasmic reticulum	73.84	73.84
TraesCS5D01G241200.1	Wheat	golgi	74.77	73.41
CDY18278	Canola	endoplasmic reticulum	73.61	72.94
CDY12149	Canola	endoplasmic reticulum	74.77	72.91
Bra005546.1-P	Field mustard	endoplasmic reticulum	74.77	72.91
CDY53400	Canola	endoplasmic reticulum	56.94	72.78
CDY52544	Canola	endoplasmic reticulum	74.77	72.75
CDX79497	Canola	endoplasmic reticulum	74.07	72.23
AT1G04980.1	Thale cress	endoplasmic reticulum	74.07	71.59
AT2G32920.1	Thale cress	endoplasmic reticulum	72.69	71.36
HORVU5Hr1G067570.1	Barley	plasma membrane	75.93	63.32
Solyc01g100320.2.1	Tomato	extracellular	25.69	30.92
Solyc11g069690.1.1	Tomato	extracellular	6.94	24.0
Solyc06g060290.2.1	Tomato	plastid	18.29	18.04
Solyc05g056400.2.1	Tomato	plastid	21.53	17.58
Solyc05g018700.2.1	Tomato	plastid	18.52	16.13
Solyc06g005940.2.1	Tomato	nucleus, plastid	18.06	15.63
Solyc04g049450.2.1	Tomato	endoplasmic reticulum, nucleus, plastid	20.37	15.63
Solyc11g069400.1.1	Tomato	plastid	20.6	15.34
Solyc06g075210.2.1	Tomato	unclear	17.36	13.66
Solyc06g065320.2.1	Tomato	endoplasmic reticulum	13.43	13.12
Solyc03g120720.2.1	Tomato	plastid	15.51	12.45
Solyc11g019920.1.1	Tomato	plastid, unclear	12.04	11.95

Protein Annotations

MapMan:18.11.1.2	Gene3D:3.40.30.10	InterPro:Disulphide_isomerase	GO:GO:0003674	GO:GO:0003756	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005788
GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009987	GO:GO:0016853	GO:GO:0019725
GO:GO:0034976	GO:GO:0045454	InterPro:IPR013766	UniProt:K4CF48	PFAM:PF00085	PRINTS:PR00421
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR18929	PANTHER:PTHR18929:SF38	SUPFAM:SSF52833	SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc07g049450.2	EnsemblPlants:Solyc07g049450.2.1	TIGRFAMs:TIGR01126	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
UniParc:UPI000276B24C	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:-:59717344..59724637

Molecular Weight (calculated)

47070.4 Da

IEP (calculated)

5.544

GRAVY (calculated)

-0.163

Length

432 amino acids

Sequence
(BLAST)

001: MDRASVFPLF LIVLHFIATA NALYGPTSPV VQLTESNFKS KVLNSKGIVL VEFFAPWCGH CQALTPAWEK AATILKGVAT VAALDADAHK SLAQEYGIRG
101: FPTIKVFAPG KPPVDYQGAR EAKPIAEYAL QQIKALLKER IHGKATGGSS ESSEPSASVE LNSRNFDENV LKSKDLWIVE FFAPWCGHCK KLAPEWKKAA
201: KNLQGKVKLG HVDCDAEKSL MSRYNVQGFP TILVFGADKE SPVTYEGART ASAIESFGLE QLETNVAPPE VVELTSPDVM EEKCNSAAIC FVSFLPDILD
301: SKAEGRNKYL EMLLAVAEKF KRNPYSFVWV GAGKQPDLEK HVGVGGYGYP AMVALNVKKG VYAPLKSAFQ RQPIIDFVKE AGLGGKGNLP LAATPSIVKS
401: EPWDGKDGEI IEEDEFSLEE LMGDDTPNKD EL

Best Arabidopsis Sequence Match ( AT1G04980.1 )
(BLAST)

001: MERKMYKSTV FPICCLLFAL FDRGNALYGS SSPVLQLTPS NFKSKVLNSN GVVLVEFFAP WCGHCQSLTP TWEKVASTLK GIATVAAIDA DAHKSVSQDY
101: GVRGFPTIKV FVPGKPPIDY QGARDAKSIS QFAIKQIKAL LKDRLDGKTS GTKNGGGSSE KKKSEPSASV ELNSSNFDEL VTESKELWIV EFFAPWCGHC
201: KKLAPEWKKA ANNLKGKVKL GHVNCDAEQS IKSRFKVQGF PTILVFGSDK SSPVPYEGAR SASAIESFAL EQLESNAGPA EVTELTGPDV MEDKCGSAAI
301: CFVSFLPDIL DSKAEGRNKY LEMLLSVADK FKKDPYGFVW VAAGKQPDLE KRVGVGGYGY PAMVALNAKK GAYAPLKSGF EVKHLKDFVK EAAKGGKGNL
401: PIDGTMEIVK TEAWDGKDGE VVDADEFSLE DLMGNDDEAS TESKDDL

Arabidopsis Description

PDIL2-2Protein disulfide-isomerase like 2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAU6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.