Factsheet for TraesCS5B01G232900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G234400.1	Wheat	golgi	98.86	98.86
TraesCS5D01G241200.1	Wheat	golgi	98.41	98.41
Os09t0451500-02	Rice	plasma membrane	90.23	90.02
EER96832	Sorghum	endoplasmic reticulum	88.18	88.38
Zm00001d020687_P002	Maize	endoplasmic reticulum	88.41	88.21
Zm00001d005866_P003	Maize	endoplasmic reticulum	87.05	86.85
HORVU5Hr1G067570.1	Barley	plasma membrane	98.64	83.78
VIT_12s0059g01560.t01	Wine grape	endoplasmic reticulum	75.91	77.14
KRH73319	Soybean	endoplasmic reticulum	75.68	76.03
PGSC0003DMT400001769	Potato	extracellular	74.55	75.93
Solyc07g049450.2.1	Tomato	nucleus	74.55	75.93
KRH14820	Soybean	endoplasmic reticulum	75.23	75.57
GSMUA_Achr7P12170_001	Banana	endoplasmic reticulum	73.86	75.41
Bra015375.1-P	Field mustard	endoplasmic reticulum	72.95	74.31
CDY53400	Canola	endoplasmic reticulum	56.59	73.67
CDY18278	Canola	endoplasmic reticulum	72.73	73.39
CDY12149	Canola	endoplasmic reticulum	72.27	71.78
Bra005546.1-P	Field mustard	endoplasmic reticulum	72.05	71.56
CDY52544	Canola	endoplasmic reticulum	72.05	71.4
AT1G04980.1	Thale cress	endoplasmic reticulum	71.59	70.47
CDX79497	Canola	endoplasmic reticulum	70.45	69.98
AT2G32920.1	Thale cress	endoplasmic reticulum	69.55	69.55
TraesCS1B01G126100.1	Wheat	endoplasmic reticulum	23.41	28.07
TraesCS4B01G196700.2	Wheat	endoplasmic reticulum	9.32	26.28
TraesCS4B01G101800.3	Wheat	golgi	23.18	19.92
TraesCS2B01G323200.1	Wheat	endoplasmic reticulum	21.36	18.15
TraesCS6B01G005100.1	Wheat	endoplasmic reticulum	14.55	15.92
TraesCS3B01G532200.1	Wheat	endoplasmic reticulum	20.68	15.48
TraesCS6B01G005500.1	Wheat	endoplasmic reticulum	20.45	15.15
TraesCS6B01G261500.2	Wheat	endoplasmic reticulum	13.41	14.11
TraesCS2B01G321000.1	Wheat	golgi	12.95	13.67
TraesCS6B01G005700.1	Wheat	endoplasmic reticulum	8.64	13.52
TraesCS6B01G005600.1	Wheat	plastid	9.09	12.38
TraesCS7B01G022800.1	Wheat	endoplasmic reticulum	15.45	12.25

Protein Annotations

MapMan:18.11.1.2	Gene3D:3.40.30.10	InterPro:Disulphide_isomerase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005788	GO:GO:0008150
GO:GO:0009987	GO:GO:0016853	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	PFAM:PF00085
PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR18929	PANTHER:PTHR18929:SF38	SUPFAM:SSF52833
SignalP:SignalP-noTM	TIGRFAMs:TIGR01126	TMHMM:TMhelix	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
EnsemblPlantsGene:TraesCS5B01G232900	EnsemblPlants:TraesCS5B01G232900.1	TIGR:cd02983	TIGR:cd03001	SEG:seg	:

Description

No Description!

Coordinates

chr5B:+:410848078..410853657

Molecular Weight (calculated)

47224.4 Da

IEP (calculated)

5.145

GRAVY (calculated)

-0.152

Length

440 amino acids

Sequence
(BLAST)

001: MRPAILAALL LLLAAAASPA AALYSAGSPV LQLNPNNFKK VLNANGVVLV EFFAPWCGHC KQLTPIWEKA AGVLKGVATV AALDADAHKE LAQQYGIRGF
101: PTIKVFLPGK PPVDYEGARD VKPIVNFALS QVKGLLRDRL DGKTSGGSSG KTSGGSSEKK HEPNESVELN SSNFDELVVK SKDLWIVEFF APWCGHCKKL
201: APEWKRAAKN LKGQVKLGHV DCDSDKSLMS KYKVEGFPTI LVFGADKESP FPYQGARAAS AIESFALEQL EANAAPPEVS ELTSADVMEE KCASAAICFV
301: SFLPDILDSK AEGRNKYLEL LLSVAEKFKK SPYSFVWAGA GKQADLEKQV GVGGYGYPAM VALNVKKGAY APLRSAFELA EITEFVKEAG RGGKGNLPLE
401: GAPTVVQSEP WDGKDGEVIE EDEFSLEELM ADSSPPNDEL

Best Arabidopsis Sequence Match ( AT1G04980.1 )
(BLAST)

001: MERKMYKSTV FPICCLLFAL FDRGNALYGS SSPVLQLTPS NFKSKVLNSN GVVLVEFFAP WCGHCQSLTP TWEKVASTLK GIATVAAIDA DAHKSVSQDY
101: GVRGFPTIKV FVPGKPPIDY QGARDAKSIS QFAIKQIKAL LKDRLDGKTS GTKNGGGSSE KKKSEPSASV ELNSSNFDEL VTESKELWIV EFFAPWCGHC
201: KKLAPEWKKA ANNLKGKVKL GHVNCDAEQS IKSRFKVQGF PTILVFGSDK SSPVPYEGAR SASAIESFAL EQLESNAGPA EVTELTGPDV MEDKCGSAAI
301: CFVSFLPDIL DSKAEGRNKY LEMLLSVADK FKKDPYGFVW VAAGKQPDLE KRVGVGGYGY PAMVALNAKK GAYAPLKSGF EVKHLKDFVK EAAKGGKGNL
401: PIDGTMEIVK TEAWDGKDGE VVDADEFSLE DLMGNDDEAS TESKDDL

Arabidopsis Description

PDIL2-2Protein disulfide-isomerase like 2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAU6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.