Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 9
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
endoplasmic reticulum: 27224218 endoplasmic reticulum: 28499913 mitochondrion: 28499913 nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH14820 | Soybean | endoplasmic reticulum | 97.03 | 97.03 |
| VIT_12s0059g01560.t01 | Wine grape | endoplasmic reticulum | 82.42 | 83.37 |
| GSMUA_Achr7P12170_001 | Banana | endoplasmic reticulum | 79.45 | 80.74 |
| PGSC0003DMT400001769 | Potato | extracellular | 78.77 | 79.86 |
| Solyc07g049450.2.1 | Tomato | nucleus | 78.77 | 79.86 |
| Os09t0451500-02 | Rice | plasma membrane | 77.85 | 77.32 |
| EER96832 | Sorghum | endoplasmic reticulum | 76.03 | 75.85 |
| Zm00001d020687_P002 | Maize | endoplasmic reticulum | 76.26 | 75.74 |
| Bra015375.1-P | Field mustard | endoplasmic reticulum | 74.66 | 75.69 |
| TraesCS5B01G232900.1 | Wheat | golgi | 76.03 | 75.68 |
| TraesCS5A01G234400.1 | Wheat | golgi | 75.8 | 75.45 |
| TraesCS5D01G241200.1 | Wheat | golgi | 75.34 | 75.0 |
| CDY18278 | Canola | endoplasmic reticulum | 74.43 | 74.77 |
| CDY53400 | Canola | endoplasmic reticulum | 57.53 | 74.56 |
| Zm00001d005866_P003 | Maize | endoplasmic reticulum | 74.89 | 74.38 |
| CDX79497 | Canola | endoplasmic reticulum | 74.89 | 74.04 |
| CDY12149 | Canola | endoplasmic reticulum | 74.66 | 73.81 |
| Bra005546.1-P | Field mustard | endoplasmic reticulum | 74.66 | 73.81 |
| CDY52544 | Canola | endoplasmic reticulum | 74.43 | 73.42 |
| AT1G04980.1 | Thale cress | endoplasmic reticulum | 74.89 | 73.38 |
| AT2G32920.1 | Thale cress | endoplasmic reticulum | 72.37 | 72.05 |
| HORVU5Hr1G067570.1 | Barley | plasma membrane | 76.71 | 64.86 |
| KRH69241 | Soybean | endoplasmic reticulum | 5.71 | 29.76 |
| KRH68449 | Soybean | endoplasmic reticulum | 23.97 | 29.01 |
| KRH69242 | Soybean | cytosol | 18.26 | 28.17 |
| KRH31823 | Soybean | endoplasmic reticulum | 23.29 | 28.02 |
| KRG96732 | Soybean | endoplasmic reticulum | 23.52 | 26.96 |
| KRH54865 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 18.49 | 25.55 |
| KRH10410 | Soybean | endoplasmic reticulum | 7.99 | 24.82 |
| KRH22935 | Soybean | endoplasmic reticulum | 8.22 | 24.49 |
| KRH18702 | Soybean | endoplasmic reticulum | 21.92 | 19.39 |
| KRH16370 | Soybean | endoplasmic reticulum | 21.92 | 19.35 |
| KRH64644 | Soybean | nucleus | 22.37 | 18.67 |
| KRH53259 | Soybean | endoplasmic reticulum | 21.23 | 18.49 |
| KRH53258 | Soybean | mitochondrion | 16.21 | 18.02 |
| KRH22896 | Soybean | endoplasmic reticulum | 20.78 | 16.31 |
| KRH26418 | Soybean | endoplasmic reticulum | 20.78 | 15.12 |
| KRH24870 | Soybean | endoplasmic reticulum | 19.63 | 14.85 |
| KRH29922 | Soybean | endoplasmic reticulum | 19.86 | 14.85 |
| KRH23443 | Soybean | endoplasmic reticulum | 15.75 | 13.91 |
| KRH34995 | Soybean | endoplasmic reticulum | 13.24 | 13.39 |
| KRH09876 | Soybean | endoplasmic reticulum | 15.53 | 13.0 |
| KRH64647 | Soybean | cytosol, mitochondrion | 5.94 | 12.26 |
Protein Annotations
| EntrezGene:100811253 | MapMan:18.11.1.2 | Gene3D:3.40.30.10 | EMBL:ACUP02001273 | InterPro:Disulphide_isomerase | EnsemblPlantsGene:GLYMA_02G266900 |
| GO:GO:0003674 | GO:GO:0003756 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0006457 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016853 | GO:GO:0019725 | GO:GO:0034976 | GO:GO:0045454 | UniProt:I1JIH4 | InterPro:IPR013766 |
| EnsemblPlants:KRH73319 | ProteinID:KRH73319 | ProteinID:KRH73319.1 | PFAM:PF00085 | PRINTS:PR00421 | ScanProsite:PS00194 |
| PFscan:PS51352 | PANTHER:PTHR18929 | PANTHER:PTHR18929:SF38 | SUPFAM:SSF52833 | SignalP:SignalP-TM | TIGRFAMs:TIGR01126 |
| TMHMM:TMhelix | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI0002336E38 | SEG:seg |
Description
hypothetical protein
Coordinates
chr2:-:45143254..45147258
Molecular Weight (calculated)
47830.2 Da
IEP (calculated)
5.135
GRAVY (calculated)
-0.122
Length
438 amino acids
Sequence
(BLAST)
(BLAST)
001: MPKSQFRTPF LVSFSLLLFI FNLTPSYALY GASTPVLQLT PSNFKSKVLN SNGVVLVEFF APWCGHCQAL TPIWEKAATV LKGVVTVAAI DADAHPSLAQ
101: EYGIRGFPTI KVFAPGKPPV DYQGARDVKP IAEFALQQVK ALLKDRLSGK ATGGSSEKTE TSSSVELNSG NFDELVIKSK ELWIVEFFAP WCGHCKKLAP
201: EWKKASNNLK GKVKLGHVDC DAEKSLMSRF KVQGFPTILV FGADKDSPIP YEGARTASAI ESFALEQLET NIAPPEVTEL YSPDVLEEKC GSAAICFVAF
301: LPDILDSKAE GRNRYLQQLL SVAEKFKRSP YSYVWVAAGK QPDLEKNVGV GGYGYPALVA LNLKKAVYAP LKSAFELDQI IEFVKEAGRG GKGNLPIEGT
401: PTIVKTEPWD GKDGEIIEED EFSLEELMGE DASSKDEL
101: EYGIRGFPTI KVFAPGKPPV DYQGARDVKP IAEFALQQVK ALLKDRLSGK ATGGSSEKTE TSSSVELNSG NFDELVIKSK ELWIVEFFAP WCGHCKKLAP
201: EWKKASNNLK GKVKLGHVDC DAEKSLMSRF KVQGFPTILV FGADKDSPIP YEGARTASAI ESFALEQLET NIAPPEVTEL YSPDVLEEKC GSAAICFVAF
301: LPDILDSKAE GRNRYLQQLL SVAEKFKRSP YSYVWVAAGK QPDLEKNVGV GGYGYPALVA LNLKKAVYAP LKSAFELDQI IEFVKEAGRG GKGNLPIEGT
401: PTIVKTEPWD GKDGEIIEED EFSLEELMGE DASSKDEL
001: MERKMYKSTV FPICCLLFAL FDRGNALYGS SSPVLQLTPS NFKSKVLNSN GVVLVEFFAP WCGHCQSLTP TWEKVASTLK GIATVAAIDA DAHKSVSQDY
101: GVRGFPTIKV FVPGKPPIDY QGARDAKSIS QFAIKQIKAL LKDRLDGKTS GTKNGGGSSE KKKSEPSASV ELNSSNFDEL VTESKELWIV EFFAPWCGHC
201: KKLAPEWKKA ANNLKGKVKL GHVNCDAEQS IKSRFKVQGF PTILVFGSDK SSPVPYEGAR SASAIESFAL EQLESNAGPA EVTELTGPDV MEDKCGSAAI
301: CFVSFLPDIL DSKAEGRNKY LEMLLSVADK FKKDPYGFVW VAAGKQPDLE KRVGVGGYGY PAMVALNAKK GAYAPLKSGF EVKHLKDFVK EAAKGGKGNL
401: PIDGTMEIVK TEAWDGKDGE VVDADEFSLE DLMGNDDEAS TESKDDL
101: GVRGFPTIKV FVPGKPPIDY QGARDAKSIS QFAIKQIKAL LKDRLDGKTS GTKNGGGSSE KKKSEPSASV ELNSSNFDEL VTESKELWIV EFFAPWCGHC
201: KKLAPEWKKA ANNLKGKVKL GHVNCDAEQS IKSRFKVQGF PTILVFGSDK SSPVPYEGAR SASAIESFAL EQLESNAGPA EVTELTGPDV MEDKCGSAAI
301: CFVSFLPDIL DSKAEGRNKY LEMLLSVADK FKKDPYGFVW VAAGKQPDLE KRVGVGGYGY PAMVALNAKK GAYAPLKSGF EVKHLKDFVK EAAKGGKGNL
401: PIDGTMEIVK TEAWDGKDGE VVDADEFSLE DLMGNDDEAS TESKDDL
Arabidopsis Description
PDIL2-2Protein disulfide-isomerase like 2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAU6]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.