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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 1
  • endoplasmic reticulum 6
  • mitochondrion 3
  • extracellular 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, secretory
BaCelLo:cytosol
EpiLoc:endoplasmic reticulum
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:endoplasmic reticulum
Predotar:mitochondrion
PProwler:secretory
TargetP:secretory
WoLF PSORT:mitochondrion
YLoc:endoplasmic reticulum
 plasma membrane: 19658398
nucleus: 21132161
extracellular: 25724908
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 19658398 doi
S Komatsu, T Wada, Y Abaléa, MZ Nouri, Y Nanjo, N Nakayama, S Shimamura, R Yamamoto, T Nakamura, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 25724908 doi
VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith
From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH53259 Soybean endoplasmic reticulum 91.81 95.83
KRH16370 Soybean endoplasmic reticulum 74.1 78.43
KRH18702 Soybean endoplasmic reticulum 73.33 77.78
KRH53258 Soybean mitochondrion 57.52 76.65
VIT_18s0001g02510.t01 Wine grape endoplasmic reticulum 70.1 73.75
KRH64647 Soybean cytosol, mitochondrion 29.52 73.11
Solyc06g060290.2.1 Tomato plastid 59.05 70.78
PGSC0003DMT400045299 Potato endoplasmic reticulum 66.86 70.62
KRH69241 Soybean endoplasmic reticulum 6.48 40.48
KRH22896 Soybean endoplasmic reticulum 30.48 28.67
KRH31823 Soybean endoplasmic reticulum 19.81 28.57
KRH29922 Soybean endoplasmic reticulum 31.05 27.82
KRH24870 Soybean endoplasmic reticulum 30.67 27.81
KRH26418 Soybean endoplasmic reticulum 30.48 26.58
KRH68449 Soybean endoplasmic reticulum 18.1 26.24
KRG96732 Soybean endoplasmic reticulum 18.1 24.87
KRH69242 Soybean cytosol 13.33 24.65
KRH23443 Soybean endoplasmic reticulum 22.1 23.39
KRH34995 Soybean endoplasmic reticulum 19.24 23.33
KRH09876 Soybean endoplasmic reticulum 23.05 23.14
KRH10410 Soybean endoplasmic reticulum 6.1 22.7
KRH73319 Soybean endoplasmic reticulum 18.67 22.37
KRH14820 Soybean endoplasmic reticulum 18.67 22.37
KRH22935 Soybean endoplasmic reticulum 6.1 21.77
KRH54865 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 12.95 21.45
Protein Annotations
EntrezGene:100170705Gene3D:3.40.30.10MapMan:50.5.3EMBL:AB182628EMBL:ACUP02002770InterPro:Disulphide_isomerase
EnsemblPlantsGene:GLYMA_04G247900GO:GO:0003674GO:GO:0003756GO:GO:0003824GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0006457GO:GO:0006950GO:GO:0008150
GO:GO:0009987GO:GO:0016853GO:GO:0019725GO:GO:0034976GO:GO:0045454UniProt:I7FST9
InterPro:IPR013766EnsemblPlants:KRH64644ProteinID:KRH64644ProteinID:KRH64644.1PFAM:PF00085PFAM:PF13848
PRINTS:PR00421ScanProsite:PS00194PFscan:PS51352PANTHER:PTHR18929PANTHER:PTHR18929:SF186InterPro:Prot_disulphide_isomerase
SUPFAM:SSF52833SignalP:SignalP-TMTIGRFAMs:TIGR01126TIGRFAMs:TIGR01130TMHMM:TMhelixInterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CSInterPro:Thioredoxin_domainUniParc:UPI00003B336CSEG:seg::
Description
hypothetical protein
Coordinates
chr4:-:51507805..51512243
Molecular Weight (calculated)
58717.8 Da
IEP (calculated)
4.818
GRAVY (calculated)
-0.431
Length
525 amino acids
Sequence
(BLAST)
001: MPKFFHSIFR GTMAGRVSTC FFFVFALSLL LPFQISAEES SEKEFVLTLD HSNFHDTVSK HDFIVVEFYA PWCGHCKKLA PEYEKAASIL SSHDPPVVLA
101: KIDANEEKNK DLASQYDVRG YPTIKILRNG GKNVQEYKGP READGIVDYL KKQSGPASTE IKSADEATAF IGENKVAIVG VFPKFSGEEF DNFSALAEKL
201: RSDYDFGHTL NAKHLPRGES SVSGPVVRLF KPFDELFVDF QDFNVEALEK FVEESSTPVV TVFNNDPSNH PFVAKFFNSP NAKAMLFINF TAEGAESFKS
301: KYREAAEQHK QQGVSFLVGD VESSQGAFQY FGLKEEQVPL IIIQHNDGKK FFKPNLEADH IPTWLKAYKD GNVAPFVKSE PIPEANDEPV KVVVGNSLED
401: IVFKSGKNVL LEFYAPWCGH CKQLAPILDE VAISYQSDAD VVIAKLDATA NDIPSETFDV QGYPTVYFRS ASGKLSQYEG GRTKEDIIEF IEKNRDKPAQ
501: QEQGQDKPAQ QEQGQDEQEK GKDEL
Best Arabidopsis Sequence Match ( AT1G77510.1 )
(BLAST)
001: MAFKGFACFS ILLLLSLFVS SIRSEETKEF VLTLDHSNFT ETISKHDFIV VEFYAPWCGH CQKLAPEYEK AASELSSHNP PLALAKIDAS EEANKEFANE
101: YKIQGFPTLK ILRNGGKSVQ DYNGPREAEG IVTYLKKQSG PASVEIKSAD SATEVVGEKN VVAVGVFPKL SGDEFDSFMA LAEKLRADYD FAHTLDAKFL
201: PRGESVEGPA VRLFKPFDEL FVDSKDFNGE ALEKFVKESS IPLVTVFDSD PNNHPYVAKF FESPATKAMM FVNFTGATAE ALKSKYREVA TSNKDQSLAF
301: LVGDAESSQG AFQYFGLEES QVPLIIIQTP DNKKYLKVNV EVDQIESWFK DFQDGKVAVH KKSQPIPAEN NEPVKVVVAE SLDDIVFKSG KNVLIEFYAP
401: WCGHCQKLAP ILDEVALSFQ NDPSVIIAKL DATANDIPSD TFDVKGFPTI YFRSASGNVV VYEGDRTKED FINFVEKNSE KKPTSHGEES TKSEEPKKTE
501: ETAAKDEL
Arabidopsis Description
PDIL1-2Protein disulfide isomerase-like 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRG3]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.