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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • cytosol 1
  • mitochondrion 1
  • endoplasmic reticulum 5
  • plastid 2
  • extracellular 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:cytosol
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:endoplasmic reticulum
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH10410 Soybean endoplasmic reticulum 93.2 97.16
VIT_06s0004g03250.t01 Wine grape endoplasmic reticulum 72.11 71.62
Solyc11g069690.1.1 Tomato extracellular 59.18 69.6
Bra018672.1-P Field mustard endoplasmic reticulum 67.35 68.75
CDX93606 Canola endoplasmic reticulum 67.35 68.75
CDX95112 Canola endoplasmic reticulum 66.67 68.06
AT1G07960.4 Thale cress endoplasmic reticulum 66.67 67.12
EER92421 Sorghum endoplasmic reticulum 65.99 64.67
Os03t0287900-01 Rice endoplasmic reticulum 63.95 63.95
TraesCS4D01G197000.1 Wheat endoplasmic reticulum 65.31 63.58
TraesCS4A01G107900.1 Wheat endoplasmic reticulum 63.95 62.25
TraesCS4B01G196700.2 Wheat endoplasmic reticulum 63.27 59.62
GSMUA_Achr10P... Banana endoplasmic reticulum 61.22 59.21
HORVU4Hr1G056730.1 Barley endoplasmic reticulum 64.63 57.93
Zm00001d028726_P001 Maize plastid 64.63 51.91
PGSC0003DMT400050665 Potato endoplasmic reticulum 61.22 44.55
KRH69241 Soybean endoplasmic reticulum 12.93 22.62
KRH68449 Soybean endoplasmic reticulum 32.65 13.26
KRG96732 Soybean endoplasmic reticulum 31.97 12.3
KRH31823 Soybean endoplasmic reticulum 29.93 12.09
KRH69242 Soybean cytosol 16.33 8.45
KRH14820 Soybean endoplasmic reticulum 25.17 8.45
KRH73319 Soybean endoplasmic reticulum 24.49 8.22
KRH54865 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 16.33 7.57
KRH34995 Soybean endoplasmic reticulum 21.09 7.16
KRH18702 Soybean endoplasmic reticulum 21.77 6.46
KRH53259 Soybean endoplasmic reticulum 21.77 6.36
KRH16370 Soybean endoplasmic reticulum 21.09 6.25
KRH64644 Soybean nucleus 21.77 6.1
KRH53258 Soybean mitochondrion 15.65 5.84
KRH22896 Soybean endoplasmic reticulum 19.73 5.2
KRH29922 Soybean endoplasmic reticulum 19.73 4.95
KRH24870 Soybean endoplasmic reticulum 19.05 4.84
KRH26418 Soybean endoplasmic reticulum 19.73 4.82
KRH09876 Soybean endoplasmic reticulum 15.65 4.4
KRH23443 Soybean endoplasmic reticulum 13.61 4.03
KRH64647 Soybean cytosol, mitochondrion 2.04 1.42
Protein Annotations
EntrezGene:100814374Gene3D:3.40.30.10MapMan:35.1EMBL:ACUP02008446EMBL:BT095364UniProt:C6TCR7
ncoils:CoilEnsemblPlantsGene:GLYMA_13G328300GO:GO:0003674GO:GO:0003756GO:GO:0003824GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0006457GO:GO:0006950
GO:GO:0008150GO:GO:0009987GO:GO:0016853GO:GO:0019725GO:GO:0034976GO:GO:0045454
InterPro:IPR013766ProteinID:KRH22933.1ProteinID:KRH22934.1EnsemblPlants:KRH22935ProteinID:KRH22935ProteinID:KRH22935.1
EMBL:LC205738PFAM:PF00085PFscan:PS51352PANTHER:PTHR18929PANTHER:PTHR18929:SF180SUPFAM:SSF52833
SignalP:SignalP-noTMInterPro:Thioredoxin-like_sfInterPro:Thioredoxin_domainUniParc:UPI0001B1628ESEG:seg:
Description
hypothetical protein
Coordinates
chr13:-:42299382..42301917
Molecular Weight (calculated)
16848.0 Da
IEP (calculated)
4.896
GRAVY (calculated)
-0.324
Length
147 amino acids
Sequence
(BLAST)
001: MRTHTHTYTY TIFSLILLSL FLRTHSEVIT LTSDTFNDKI KEKDTAWFVK FCVPWCKHCK NLGSLWDDLG KAMEGEDEIE VGEVDCGMDK AVCSKVDIHS
101: YPTFKVFYDG EEVARYQGTR DVESMKTFVL EEAEKAAAKA LESNKEL
Best Arabidopsis Sequence Match ( AT1G07960.2 )
(BLAST)
001: MTLGARLVAP MIILLLFIPI ELVKAEVITL TPETFSDKIK EKDTAWFVKF CVPWCKHCKK LGNLWEDLGK AMEGDDEIEV GEVDCGTSRA VCTKVEIHSY
101: PTFMLFYNGE EVSKYKGKRD VESLKAFVVE ETEKAAEKAQ LEDKEL
Arabidopsis Description
PDIL5-1PDIL5-1 [Source:UniProtKB/TrEMBL;Acc:A0A178WDX4]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.