Factsheet for VIT_06s0004g03250.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 6
endoplasmic reticulum 7
vacuole 5
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10410	Soybean	endoplasmic reticulum	70.27	73.76
KRH22935	Soybean	endoplasmic reticulum	71.62	72.11
Bra018672.1-P	Field mustard	endoplasmic reticulum	69.59	71.53
CDX93606	Canola	endoplasmic reticulum	68.92	70.83
CDX95112	Canola	endoplasmic reticulum	68.92	70.83
Os03t0287900-01	Rice	endoplasmic reticulum	68.92	69.39
EER92421	Sorghum	endoplasmic reticulum	69.59	68.67
GSMUA_Achr10P...	Banana	endoplasmic reticulum	70.27	68.42
TraesCS4D01G197000.1	Wheat	endoplasmic reticulum	69.59	68.21
TraesCS4A01G107900.1	Wheat	endoplasmic reticulum	68.92	67.55
AT1G07960.4	Thale cress	endoplasmic reticulum	65.54	66.44
Solyc11g069690.1.1	Tomato	extracellular	56.08	66.4
TraesCS4B01G196700.2	Wheat	endoplasmic reticulum	66.89	63.46
HORVU4Hr1G056730.1	Barley	endoplasmic reticulum	69.59	62.8
Zm00001d028726_P001	Maize	plastid	70.27	56.83
PGSC0003DMT400050665	Potato	endoplasmic reticulum	60.81	44.55
VIT_12s0059g01560.t01	Wine grape	endoplasmic reticulum	22.97	7.85
VIT_18s0001g02510.t01	Wine grape	endoplasmic reticulum	25.0	7.41
VIT_18s0075g00210.t01	Wine grape	endoplasmic reticulum	19.59	7.32
VIT_07s0031g02660.t01	Wine grape	endoplasmic reticulum	22.3	6.6
VIT_06s0004g02890.t01	Wine grape	endoplasmic reticulum	25.68	6.59
VIT_13s0019g04240.t01	Wine grape	endoplasmic reticulum	24.32	6.42
VIT_09s0002g04250.t01	Wine grape	endoplasmic reticulum	17.57	4.84

Protein Annotations

EntrezGene:100259023	wikigene:100259023	Gene3D:3.40.30.10	MapMan:35.1	ProteinID:CBI16273	ProteinID:CBI16273.3
ncoils:Coil	UniProt:D7SKU5	EMBL:FN594951	GO:GO:0003674	GO:GO:0003756	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006457
GO:GO:0006950	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0034976	GO:GO:0045454
InterPro:IPR013766	EntrezGene:LOC100259023	wikigene:LOC100259023	PFAM:PF00085	PFscan:PS51352	PANTHER:PTHR18929
PANTHER:PTHR18929:SF180	SUPFAM:SSF52833	SignalP:SignalP-noTM	TIGR:TC64158	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain
UniParc:UPI0001BE0FDD	ArrayExpress:VIT_06s0004g03250	EnsemblPlantsGene:VIT_06s0004g03250	EnsemblPlants:VIT_06s0004g03250.t01	unigene:Vvi.8977	RefSeq:XP_002264005
RefSeq:XP_002264005.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:4016649..4032015

Molecular Weight (calculated)

16745.1 Da

IEP (calculated)

4.757

GRAVY (calculated)

-0.180

Length

148 amino acids

Sequence
(BLAST)

001: MKNQSHCLLL LLVLITIFSS LKTTKAEVIT LTADTFSDKV KEKDTAWFVQ FCVPWCKHCK NLGSLWEDLG KIMEGEDEIE IGQVDCGVSK SVCSKVDIHS
101: YPTFKVFYDG EEVAKYQGPR NVESLKTFVL EEAEKAAMKA ELENEKDL

Best Arabidopsis Sequence Match ( AT1G07960.2 )
(BLAST)

001: MTLGARLVAP MIILLLFIPI ELVKAEVITL TPETFSDKIK EKDTAWFVKF CVPWCKHCKK LGNLWEDLGK AMEGDDEIEV GEVDCGTSRA VCTKVEIHSY
101: PTFMLFYNGE EVSKYKGKRD VESLKAFVVE ETEKAAEKAQ LEDKEL

Arabidopsis Description

PDIL5-1PDIL5-1 [Source:UniProtKB/TrEMBL;Acc:A0A178WDX4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.