Factsheet for TraesCS4B01G196700.2

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
endoplasmic reticulum 6
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G107900.1	Wheat	endoplasmic reticulum	89.74	92.72
TraesCS4D01G197000.1	Wheat	endoplasmic reticulum	88.46	91.39
HORVU4Hr1G056730.1	Barley	endoplasmic reticulum	89.1	84.76
Os03t0287900-01	Rice	endoplasmic reticulum	75.64	80.27
EER92421	Sorghum	endoplasmic reticulum	75.0	78.0
GSMUA_Achr10P...	Banana	endoplasmic reticulum	65.38	67.11
VIT_06s0004g03250.t01	Wine grape	endoplasmic reticulum	63.46	66.89
Zm00001d028726_P001	Maize	plastid	76.28	65.03
KRH10410	Soybean	endoplasmic reticulum	58.33	64.54
KRH22935	Soybean	endoplasmic reticulum	59.62	63.27
Solyc11g069690.1.1	Tomato	extracellular	50.64	63.2
Bra018672.1-P	Field mustard	endoplasmic reticulum	57.05	61.81
CDX93606	Canola	endoplasmic reticulum	57.05	61.81
AT1G07960.4	Thale cress	endoplasmic reticulum	57.69	61.64
CDX95112	Canola	endoplasmic reticulum	56.41	61.11
PGSC0003DMT400050665	Potato	endoplasmic reticulum	50.64	39.11
TraesCS1B01G126100.1	Wheat	endoplasmic reticulum	33.97	14.44
TraesCS6B01G005700.1	Wheat	endoplasmic reticulum	20.51	11.39
TraesCS5B01G232900.1	Wheat	golgi	26.28	9.32
TraesCS6B01G005600.1	Wheat	plastid	19.23	9.29
TraesCS6B01G005100.1	Wheat	endoplasmic reticulum	22.44	8.71
TraesCS2B01G321000.1	Wheat	golgi	21.79	8.15
TraesCS4B01G101800.3	Wheat	golgi	26.28	8.01
TraesCS6B01G261500.2	Wheat	endoplasmic reticulum	21.15	7.89
TraesCS2B01G323200.1	Wheat	endoplasmic reticulum	22.44	6.76
TraesCS3B01G532200.1	Wheat	endoplasmic reticulum	21.79	5.78
TraesCS6B01G005500.1	Wheat	endoplasmic reticulum	21.15	5.56
TraesCS7B01G022800.1	Wheat	endoplasmic reticulum	16.67	4.68

Protein Annotations

EnsemblPlants:TraesCS4B01G196700.2	EnsemblPlantsGene:TraesCS4B01G196700	Gene3D:3.40.30.10	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0045454	InterPro:IPR013766	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	PANTHER:PTHR18929	PANTHER:PTHR18929:SF180
PFAM:PF00085	PFscan:PS51352	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF52833	TIGR:cd02961
TMHMM:TMhelix	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:423772131..423774538

Molecular Weight (calculated)

17411.1 Da

IEP (calculated)

7.409

GRAVY (calculated)

-0.162

Length

156 amino acids

Sequence
(BLAST)

001: MDPARRSRLP THLLLVAVTL LAALAARSGA EVITLTEETF SDKIKEKDTV WFVQFCVPWC KHCKSLGTLW EDLGKVIEGT DEIEIGKVDC GASKPVCSKV
101: DIHSYPTFKV FYDGEEVAKY KGPRDVEALK TFVLKEAEKA GERGTIHQLF KTLAPR

Best Arabidopsis Sequence Match ( AT1G07960.2 )
(BLAST)

001: MTLGARLVAP MIILLLFIPI ELVKAEVITL TPETFSDKIK EKDTAWFVKF CVPWCKHCKK LGNLWEDLGK AMEGDDEIEV GEVDCGTSRA VCTKVEIHSY
101: PTFMLFYNGE EVSKYKGKRD VESLKAFVVE ETEKAAEKAQ LEDKEL

Arabidopsis Description

PDIL5-1PDIL5-1 [Source:UniProtKB/TrEMBL;Acc:A0A178WDX4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.