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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 8
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • plastid 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:nucleus, plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:endoplasmic reticulum
 nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH24870 Soybean endoplasmic reticulum 92.15 93.26
KRH22896 Soybean endoplasmic reticulum 72.87 76.52
GSMUA_Achr11P... Banana cytosol, endoplasmic reticulum 59.22 74.95
GSMUA_Achr8P18890_001 Banana cytosol 58.7 73.98
VIT_06s0004g02890.t01 Wine grape endoplasmic reticulum 71.16 72.27
KRH26418 Soybean endoplasmic reticulum 73.21 71.26
PGSC0003DMT400033517 Potato endoplasmic reticulum, mitochondrion 63.48 66.07
Solyc04g049450.2.1 Tomato endoplasmic reticulum, nucleus, plastid 63.14 65.72
CDY09193 Canola endoplasmic reticulum 65.19 65.08
CDY53631 Canola endoplasmic reticulum 65.53 64.43
Bra002464.1-P Field mustard endoplasmic reticulum 65.36 64.26
CDY31525 Canola endoplasmic reticulum 65.36 64.26
Bra020239.1-P Field mustard endoplasmic reticulum 64.33 64.12
AT5G60640.1 Thale cress endoplasmic reticulum 65.19 63.99
Os02t0100100-01 Rice plasma membrane 56.83 59.15
CDY56958 Canola endoplasmic reticulum 58.36 59.07
CDX73422 Canola endoplasmic reticulum 58.02 59.03
Bra007120.1-P Field mustard endoplasmic reticulum 58.19 58.89
AT3G54960.1 Thale cress endoplasmic reticulum 57.85 58.55
EES06089 Sorghum endoplasmic reticulum 56.48 57.87
Zm00001d054106_P003 Maize endoplasmic reticulum 55.63 57.09
Zm00001d014912_P003 Maize extracellular, plasma membrane 54.1 56.51
TraesCS6A01G001100.1 Wheat endoplasmic reticulum 55.8 56.19
TraesCS6A01G000600.1 Wheat endoplasmic reticulum 55.29 55.96
TraesCS6D01G004700.1 Wheat endoplasmic reticulum 55.29 55.2
TraesCS6D01G005200.1 Wheat golgi 55.12 54.93
TraesCS3B01G532200.1 Wheat endoplasmic reticulum 54.95 54.76
TraesCS6B01G005500.1 Wheat endoplasmic reticulum 53.24 52.53
HORVU6Hr1G001700.1 Barley endoplasmic reticulum, plastid 55.46 51.18
KRH69241 Soybean endoplasmic reticulum 5.8 40.48
TraesCS6B01G005100.1 Wheat endoplasmic reticulum 27.13 39.55
KRH23443 Soybean endoplasmic reticulum 27.47 32.46
KRH16370 Soybean endoplasmic reticulum 27.3 32.26
KRH53259 Soybean endoplasmic reticulum 27.65 32.21
KRH18702 Soybean endoplasmic reticulum 26.96 31.92
KRH09876 Soybean endoplasmic reticulum 28.16 31.55
KRH53258 Soybean mitochondrion 20.99 31.22
KRH64644 Soybean nucleus 27.82 31.05
KRH31823 Soybean endoplasmic reticulum 18.43 29.67
KRH68449 Soybean endoplasmic reticulum 17.06 27.62
KRH64647 Soybean cytosol, mitochondrion 9.56 26.42
KRH69242 Soybean cytosol 12.46 25.7
KRG96732 Soybean endoplasmic reticulum 16.72 25.65
KRH34995 Soybean endoplasmic reticulum 18.94 25.64
KRH54865 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 12.29 22.71
KRH14820 Soybean endoplasmic reticulum 15.53 20.78
KRH10410 Soybean endoplasmic reticulum 4.95 20.57
KRH73319 Soybean endoplasmic reticulum 14.85 19.86
KRH22935 Soybean endoplasmic reticulum 4.95 19.73
Protein Annotations
EntrezGene:100790223Gene3D:3.40.30.10MapMan:50.5.3EMBL:ACUP02006835InterPro:Disulphide_isomeraseEnsemblPlantsGene:GLYMA_11G146800
GO:GO:0003674GO:GO:0003756GO:GO:0003824GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0006457GO:GO:0006950GO:GO:0008150GO:GO:0009987
GO:GO:0016853GO:GO:0019725GO:GO:0034976GO:GO:0045454UniProt:I1LL59InterPro:IPR013766
EnsemblPlants:KRH29922ProteinID:KRH29922ProteinID:KRH29922.1PFAM:PF00085PFAM:PF13848PRINTS:PR00421
ScanProsite:PS00194PFscan:PS51352PANTHER:PTHR18929PANTHER:PTHR18929:SF121InterPro:Prot_disulphide_isomeraseSUPFAM:SSF52833
SignalP:SignalP-noTMTIGRFAMs:TIGR01126TIGRFAMs:TIGR01130TMHMM:TMhelixInterPro:Thioredoxin-like_sfInterPro:Thioredoxin_CS
InterPro:Thioredoxin_domainUniParc:UPI000233C6BESEG:seg:::
Description
hypothetical protein
Coordinates
chr11:+:11313825..11318478
Molecular Weight (calculated)
64887.0 Da
IEP (calculated)
4.393
GRAVY (calculated)
-0.313
Length
586 amino acids
Sequence
(BLAST)
001: MLTRKRLVVS LSLATLLLFS SLSLSLCDKT PPQNDNKKNN NDDDEDLSFL EESDDAATTS HQGHFPDPDE FDEDDGDDED DFGDFAGFDH SSEEAFKEPE
101: VDDKDVVVLK ERNFTTVVEN NRFVMVEFYA PWCGHCQALA PEYAAAATEL KPDGVVLAKV DATVENELAN EYDVQGFPTV FFFVDGVHKP YTGQRTKDAI
201: VTWIKKKIGP GVSNITTVEE AERVLTAGSK VVLGFLNSLV GAESDELAAA SKLEDDVNFY QTVVADVAKL FHIDASVKRP ALILLKKEEE KLNHFDGQFV
301: KAEIADFVTS NKLPLVTTFT RESAPVIFES QIKKQLLLFV TSNDTEKFVP VFKEAAKIFK GKLIFVHVES DNEDVGKPVA DYFGIAGNGP KVLAFTGNDD
401: GRKFLLDGEV TIDTITAFGN DFLEDKLKPF LKSDPVPESN DGDVKIVVGN NFDEIVLDES KDVLLEIYAP WCGHCQALEP TYNKLAKHLR SIESIVIAKM
501: DGTTNEHPRA KSDGFPTLLF FPAGNKSSDP IPVDVDRTVK DFYKFLRKHA SIPFQLQKLA STTKTASESS DVKESQSSTT EVKDEL
Best Arabidopsis Sequence Match ( AT5G60640.1 )
(BLAST)
001: MAFRVLLLFS LTALLIFSAV SPSFAASSSD DVDDEDLSFL EDLKEDDVPG ADSLSSSTGF DEFEGGEEED PDMYNDDDDE EGDFSDLGNP DSDPLPTPEI
101: DEKDVVVIKE RNFTDVIENN QYVLVEFYAP WCGHCQSLAP EYAAAATELK EDGVVLAKID ATEENELAQE YRVQGFPTLL FFVDGEHKPY TGGRTKETIV
201: TWVKKKIGPG VYNLTTLDDA EKVLTSGNKV VLGYLNSLVG VEHDQLNAAS KAEDDVNFYQ TVNPDVAKMF HLDPESKRPA LVLVKKEEEK ISHFDGEFVK
301: SALVSFVSAN KLALVSVFTR ETAPEIFESA IKKQLLLFVT KNESEKVLTE FQEAAKSFKG KLIFVSVDLD NEDYGKPVAE YFGVSGNGPK LIGYTGNEDP
401: KKYFFDGEIQ SDKIKIFGED FLNDKLKPFY KSDPIPEKND EDVKIVVGDN FDEIVLDDSK DVLLEVYAPW CGHCQALEPM YNKLAKHLRS IDSLVITKMD
501: GTTNEHPKAK AEGFPTILFF PAGNKTSEPI TVDTDRTVVA FYKFLRKHAT IPFKLEKPAS TESPKTAEST PKVETTETKE SPDSTTKSSQ SDSKDEL
Arabidopsis Description
PDIL1-4Protein disulfide-isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UQB2]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.