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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • cytosol 1
  • plastid 1
  • mitochondrion 2
  • endoplasmic reticulum 4
  • extracellular 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:cytosol
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Predotar:mitochondrion
PProwler:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:endoplasmic reticulum
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH22896 Soybean endoplasmic reticulum 85.88 92.65
GSMUA_Achr11P... Banana cytosol, endoplasmic reticulum 58.97 76.67
GSMUA_Achr8P18890_001 Banana cytosol 58.14 75.27
KRH24870 Soybean endoplasmic reticulum 71.76 74.61
KRH29922 Soybean endoplasmic reticulum 71.26 73.21
Solyc04g049450.2.1 Tomato endoplasmic reticulum, nucleus, plastid 63.46 67.85
PGSC0003DMT400033517 Potato endoplasmic reticulum, mitochondrion 63.46 67.85
CDY53631 Canola endoplasmic reticulum 62.29 62.92
Bra002464.1-P Field mustard endoplasmic reticulum 62.13 62.75
CDY31525 Canola endoplasmic reticulum 62.13 62.75
CDY09193 Canola endoplasmic reticulum 60.96 62.52
AT5G60640.1 Thale cress endoplasmic reticulum 61.63 62.14
Bra020239.1-P Field mustard endoplasmic reticulum 60.3 61.73
Bra007120.1-P Field mustard endoplasmic reticulum 58.14 60.45
CDX73422 Canola endoplasmic reticulum 57.81 60.42
CDY56958 Canola endoplasmic reticulum 57.97 60.28
AT3G54960.1 Thale cress endoplasmic reticulum 57.31 59.59
Os02t0100100-01 Rice plasma membrane 55.15 58.97
EES06089 Sorghum endoplasmic reticulum 54.98 57.87
Zm00001d014912_P003 Maize extracellular, plasma membrane 53.49 57.4
Zm00001d054106_P003 Maize endoplasmic reticulum 53.82 56.74
TraesCS6A01G000600.1 Wheat endoplasmic reticulum 54.15 56.3
TraesCS6A01G001100.1 Wheat endoplasmic reticulum 54.15 56.01
TraesCS6D01G004700.1 Wheat endoplasmic reticulum 54.32 55.71
TraesCS6D01G005200.1 Wheat golgi 54.32 55.61
TraesCS3B01G532200.1 Wheat endoplasmic reticulum 53.82 55.1
TraesCS6B01G005500.1 Wheat endoplasmic reticulum 53.32 54.04
HORVU6Hr1G001700.1 Barley endoplasmic reticulum, plastid 55.32 52.44
KRH69241 Soybean endoplasmic reticulum 5.48 39.29
TraesCS6B01G005100.1 Wheat endoplasmic reticulum 25.58 38.31
KRH16370 Soybean endoplasmic reticulum 27.24 33.06
KRH23443 Soybean endoplasmic reticulum 27.08 32.86
KRH18702 Soybean endoplasmic reticulum 26.91 32.73
KRH53259 Soybean endoplasmic reticulum 26.91 32.21
KRH09876 Soybean endoplasmic reticulum 27.08 31.17
KRH64644 Soybean nucleus 26.58 30.48
KRH53258 Soybean mitochondrion 19.1 29.19
KRH31823 Soybean endoplasmic reticulum 16.61 27.47
KRH68449 Soybean endoplasmic reticulum 16.11 26.8
KRH34995 Soybean endoplasmic reticulum 18.6 25.87
KRH64647 Soybean cytosol, mitochondrion 8.97 25.47
KRG96732 Soybean endoplasmic reticulum 15.61 24.61
KRH69242 Soybean cytosol 11.46 24.3
KRH14820 Soybean endoplasmic reticulum 15.61 21.46
KRH54865 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 11.3 21.45
KRH73319 Soybean endoplasmic reticulum 15.12 20.78
KRH10410 Soybean endoplasmic reticulum 4.82 20.57
KRH22935 Soybean endoplasmic reticulum 4.82 19.73
Protein Annotations
Gene3D:3.40.30.10MapMan:50.5.3UniProt:A0A0R0HDA3EMBL:ACUP02007714InterPro:Disulphide_isomeraseEnsemblPlantsGene:GLYMA_12G172800
GO:GO:0003674GO:GO:0003756GO:GO:0003824GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0006457GO:GO:0006950GO:GO:0008150GO:GO:0009987
GO:GO:0016020GO:GO:0016021GO:GO:0016853GO:GO:0019725GO:GO:0034976GO:GO:0045454
InterPro:IPR013766EnsemblPlants:KRH26418ProteinID:KRH26418ProteinID:KRH26418.1PFAM:PF00085PFAM:PF13848
PRINTS:PR00421ScanProsite:PS00194PFscan:PS51352PANTHER:PTHR18929PANTHER:PTHR18929:SF121InterPro:Prot_disulphide_isomerase
SUPFAM:SSF52833TIGRFAMs:TIGR01126TIGRFAMs:TIGR01130TMHMM:TMhelixInterPro:Thioredoxin-like_sfInterPro:Thioredoxin_CS
InterPro:Thioredoxin_domainUniParc:UPI0006EDB4E6SEG:seg:::
Description
hypothetical protein
Coordinates
chr12:+:32942160..32946987
Molecular Weight (calculated)
67315.7 Da
IEP (calculated)
4.577
GRAVY (calculated)
-0.267
Length
602 amino acids
Sequence
(BLAST)
001: MALRNGGVIK RIDFRFVQPA VESQPSLVAH THTLRSLFSF CNSIVVLFTL TMRILVVLSL ATLLLFSSLF LTLCDDLTDD EDLGFLDEPS AAPEHGHYHD
101: DDANFGDFEE DPEAYKQPEV DEKDVVILKE KNFTDTVKSN RFVMVEFYAP WCGHCQALAP EYAAAATELK GEDVILAKVD ATEENELAQQ YDVQGFPTVY
201: FFVDGIHKPY NGQRTKDAIM TWIKKKIGPG IYNLTTVEDA QRILTNETKV VLGFLNSLVG PESEELAAAS RLEDDVNFYQ TVDPDVAKLF HIDPDVKRPA
301: LILVKKEEEK LNHFDGKFEK SEIADFVFSN KLPLVTIFTR ESAPSVFENP IKKQLLLFAT SNDSEKLIPA FKEAAKSFKG KLIFVYVEMD NEDVGKPVSE
401: YFGISGNAPK VLGYTGNDDG KKFVLDGEVT ADKIKAFGDD FLEDKLKPFY KSDPVPESND GDVKIVVGNN FDEIVLDESK DVLLEIYAPW CGHCQALEPI
501: YDKLAKHLRN IESLVIAKMD GTTNEHPRAK PDGFPTLLFF PAGNKSFDPI TVDTDRTVVA FYKFLKKHAS IPFKLQKPTS TSDAKGSSDA KESQSSDVKD
601: EL
Best Arabidopsis Sequence Match ( AT5G60640.1 )
(BLAST)
001: MAFRVLLLFS LTALLIFSAV SPSFAASSSD DVDDEDLSFL EDLKEDDVPG ADSLSSSTGF DEFEGGEEED PDMYNDDDDE EGDFSDLGNP DSDPLPTPEI
101: DEKDVVVIKE RNFTDVIENN QYVLVEFYAP WCGHCQSLAP EYAAAATELK EDGVVLAKID ATEENELAQE YRVQGFPTLL FFVDGEHKPY TGGRTKETIV
201: TWVKKKIGPG VYNLTTLDDA EKVLTSGNKV VLGYLNSLVG VEHDQLNAAS KAEDDVNFYQ TVNPDVAKMF HLDPESKRPA LVLVKKEEEK ISHFDGEFVK
301: SALVSFVSAN KLALVSVFTR ETAPEIFESA IKKQLLLFVT KNESEKVLTE FQEAAKSFKG KLIFVSVDLD NEDYGKPVAE YFGVSGNGPK LIGYTGNEDP
401: KKYFFDGEIQ SDKIKIFGED FLNDKLKPFY KSDPIPEKND EDVKIVVGDN FDEIVLDDSK DVLLEVYAPW CGHCQALEPM YNKLAKHLRS IDSLVITKMD
501: GTTNEHPKAK AEGFPTILFF PAGNKTSEPI TVDTDRTVVA FYKFLRKHAT IPFKLEKPAS TESPKTAEST PKVETTETKE SPDSTTKSSQ SDSKDEL
Arabidopsis Description
PDIL1-4Protein disulfide-isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UQB2]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.