Factsheet for Solyc05g018700.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 5
endoplasmic reticulum 8
vacuole 5
plasma membrane 5
golgi 5
plastid 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036388	Potato	endoplasmic reticulum	91.73	93.05
Solyc06g060290.2.1	Tomato	plastid	45.77	51.83
Solyc05g056400.2.1	Tomato	plastid	54.84	51.42
GSMUA_Achr1P16970_001	Banana	endoplasmic reticulum	50.0	48.92
Solyc06g005940.2.1	Tomato	nucleus, plastid	48.19	47.9
GSMUA_Achr3P22070_001	Banana	endoplasmic reticulum	48.39	46.69
Os11t0199200-01	Rice	extracellular, plasma membrane	46.77	45.31
KXG28001	Sorghum	endoplasmic reticulum	45.36	43.69
TraesCS4B01G101800.3	Wheat	golgi	44.76	43.36
KXG26345	Sorghum	endoplasmic reticulum	45.16	43.24
TraesCS4A01G214200.2	Wheat	plastid	44.76	43.11
TraesCS4D01G098400.1	Wheat	golgi	44.35	42.72
TraesCS2B01G323200.1	Wheat	endoplasmic reticulum	44.35	42.47
TraesCS2A01G306500.1	Wheat	endoplasmic reticulum	44.15	42.36
TraesCS2D01G305000.1	Wheat	endoplasmic reticulum	43.95	42.17
HORVU4Hr1G049820.1	Barley	cytosol	15.12	41.21
Zm00001d007301_P001	Maize	endoplasmic reticulum	45.16	40.8
HORVU4Hr1G043910.1	Barley	extracellular	45.56	40.36
Os02t0554900-01	Rice	plastid	43.75	39.82
Zm00001d049099_P005	Maize	endoplasmic reticulum	42.54	39.66
Zm00001d028108_P001	Maize	mitochondrion	11.09	39.29
Os04t0436300-01	Rice	endoplasmic reticulum	22.98	38.91
HORVU4Hr1G049880.2	Barley	mitochondrion, plastid	18.35	31.06
Zm00001d016017_P002	Maize	cytosol	15.12	29.41
Zm00001d041417_P001	Maize	endoplasmic reticulum	12.7	28.51
Zm00001d035557_P001	Maize	mitochondrion	19.35	27.99
Solyc11g069400.1.1	Tomato	plastid	27.82	23.79
Solyc04g049450.2.1	Tomato	endoplasmic reticulum, nucleus, plastid	26.41	23.27
HORVU2Hr1G076360.1	Barley	endoplasmic reticulum	24.19	23.08
Solyc06g075210.2.1	Tomato	unclear	24.19	21.86
Solyc11g069690.1.1	Tomato	extracellular	5.04	20.0
Solyc01g100320.2.1	Tomato	extracellular	14.31	19.78
Solyc03g120720.2.1	Tomato	plastid	21.17	19.52
Solyc06g065320.2.1	Tomato	endoplasmic reticulum	16.53	18.55
Solyc07g049450.2.1	Tomato	nucleus	16.13	18.52
Solyc11g019920.1.1	Tomato	plastid, unclear	15.73	17.93

Protein Annotations

Gene3D:3.40.30.10	MapMan:50.5.3	GO:GO:0003674	GO:GO:0003756	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006457	GO:GO:0006950
GO:GO:0008150	GO:GO:0009987	GO:GO:0016853	GO:GO:0019725	GO:GO:0034976	GO:GO:0045454
InterPro:IPR013766	UniProt:K4BZC4	PFAM:PF00085	PFAM:PF13848	PRINTS:PR00421	ScanProsite:PS00194
PFscan:PS51352	PANTHER:PTHR18929	PANTHER:PTHR18929:SF186	InterPro:Prot_disulphide_isomerase	SUPFAM:SSF52833	SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc05g018700.2	EnsemblPlants:Solyc05g018700.2.1	TIGRFAMs:TIGR01130	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
UniParc:UPI0002767404	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:-:22827490..22832816

Molecular Weight (calculated)

56193.0 Da

IEP (calculated)

4.640

GRAVY (calculated)

-0.191

Length

496 amino acids

Sequence
(BLAST)

001: MMKFLVLAAL LAVTAFAAEN EVVWTLDHTN YSQIISQHKM IVVQFYAPWC GYCQQLEPKY EEAASVLSNH DPPVILAKMD TTILENAELA RNFTINGVPS
101: IKIFRNGGKT VHDYKGTRET EGIIAYLKKH GGPASLEIKT EKDAATFIDE KKIVVAGIFP QLSLEKIINF TTLAEDLRVD YDFVHTLDAK LLPRGGLVDK
201: PTIRLLKPYD ELYADFEDFQ IEAMQNFIEE TSVPIMAILD DNPENQQFVN HFLHSPGDKV FLFLNFSTDL DAFKIKYYDL ALSYKGKETN FLLGDAESGK
301: KALQYFGLDT DQTPLIFVLT MGSTKYVQRH VQPDNLASWL KDCKDGKLKP YLKSQPIPEF NNETVKVVVA ETLEDMVFNS GKDVLLEFYR LGCRYCEEFA
401: PVLDEIAISF EKDPHVVIAK IDGTENDIPR DVFEVEGFPT LYLRSSTGSL SRFEGNKTKE AIIEFIQTNR SSPAFDFSIS QTQTDQVKDE LFSFAN

Best Arabidopsis Sequence Match ( AT1G77510.1 )
(BLAST)

001: MAFKGFACFS ILLLLSLFVS SIRSEETKEF VLTLDHSNFT ETISKHDFIV VEFYAPWCGH CQKLAPEYEK AASELSSHNP PLALAKIDAS EEANKEFANE
101: YKIQGFPTLK ILRNGGKSVQ DYNGPREAEG IVTYLKKQSG PASVEIKSAD SATEVVGEKN VVAVGVFPKL SGDEFDSFMA LAEKLRADYD FAHTLDAKFL
201: PRGESVEGPA VRLFKPFDEL FVDSKDFNGE ALEKFVKESS IPLVTVFDSD PNNHPYVAKF FESPATKAMM FVNFTGATAE ALKSKYREVA TSNKDQSLAF
301: LVGDAESSQG AFQYFGLEES QVPLIIIQTP DNKKYLKVNV EVDQIESWFK DFQDGKVAVH KKSQPIPAEN NEPVKVVVAE SLDDIVFKSG KNVLIEFYAP
401: WCGHCQKLAP ILDEVALSFQ NDPSVIIAKL DATANDIPSD TFDVKGFPTI YFRSASGNVV VYEGDRTKED FINFVEKNSE KKPTSHGEES TKSEEPKKTE
501: ETAAKDEL

Arabidopsis Description

PDIL1-2Protein disulfide isomerase-like 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRG3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.